FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875410_ssr25 microsatellite FC875410_ssr25:25..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_CANFA (Aquaporin-2 (Fragment) OS=Canis familiaris GN=AQP2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 463
            S+   +A  AEF++TLLFVF G+GSA+ + +        PS ++ IA+  G  +   V    ++SG H+NPAVT    +G  ++ L   FY  AQLLG++  + LL  +T
Sbjct:    1 SVAFSRAVFAEFLATLLFVFFGLGSALNWPQAL------PS-VLQIAMAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALLHEIT 103          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBPA (Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 61/192 (31.77%), Postives = 85/192 (44.27%), Query Frame = 2
Query:  155 YLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLL----------KVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            YLAE   T   V  G GSA+    + A       GL+ +A+  G   L +A AIG +ISG H+NPAVT GL  GG+        Y IAQ++G ++A  +L           VV  G A   +                     +++ +    A  K+   G  APIAIG  +    L + P +  S+NPARS
Sbjct:    4 YLAEAFGTFWLVLGGCGSAV----LAAGFPDVGIGLLGVALAFGLTVLTMAFAIG-HISGCHLNPAVTVGLWAGGRFDTKDVAPYIIAQVIGGLIAGGILYVIATGQAGFDVVGSGFAANGYGEHSPGQYSMLAALVSEIVMTMMFLIVIMGATDKRAPQG-FAPIAIGLCLTLIHLISIPVTNTSVNPARS 189          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP71_ARATH (Probable aquaporin NIP7-1 OS=Arabidopsis thaliana GN=NIP7-1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 54/196 (27.55%), Postives = 85/196 (43.37%), Query Frame = 2
Query:  110 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            FG       L   +  +AE + T + +F+  G  I+  +++        GL+  A+  G ++ V V    +ISG H+NP++T   A+ G         Y  AQ LG+  A+ L+ V   G+                       T  +V+   A    P + +LG +    IG ++   +L  GP SGGSMNPARS
Sbjct:   33 FGCLPYDIDLNPLRIVMAELVGTFILMFSVCG-VISSTQLSGGHV----GLLEYAVTAGLSVVVVVYSIGHISGAHLNPSITIAFAVFGGFPWSQVPLYITAQTLGATAAT-LVGVSVYGVNADIMATKPALSCVSAFFVELIATSIVVFLASALHCGPHQ-NLGNLTGFVIGTVISLGVLITGPISGGSMNPARS 221          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 62/195 (31.79%), Postives = 88/195 (45.13%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFV---AVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATA--------ADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            F+    EF+ T   V  G GSA+        AA    G+  + +   F L V   A A+G  ISGGH NPAV+ GLA+ G++   + + Y +AQ+ G+I A+ +L V+  G A                      T  LV  V  TA        +   +  +G  APIAIG  +    L + P +  S+NPARS
Sbjct:    2 FRKLSVEFLGTFWLVLGGCGSAVLA------AAFPEVGIGLLGVSFAFGLTVLTMAYAVGG-ISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKADFQLGGFAANGYGEHSPGGYSLTAALVTEVVMTAFFLLIILGSTHSRVPVG-FAPIAIGLGLTLIHLVSIPVTNTSVNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 67/192 (34.90%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  149 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-GGL--AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYA------TAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            KA  AEF++T L+VF GVGS + +       AL PS ++ IAI    A   AV I    SG H NPAVT    +G  I++   + Y  AQL G+   + LL  VT GG+   +  +                  T  LV  V+A      T A P    +GT   +A+G ++G        F+G SMNPARS
Sbjct:   22 KALFAEFLATGLYVFFGVGSVLPW-----PVAL-PS-VLQIAITFNLATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALLYGVTPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQTLASP-AAMIGT--SVALGHLIGIY------FTGCSMNPARS 197          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_MACPR (Aquaporin-2 (Fragment) OS=Macroscelides proboscideus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 39/110 (35.45%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 463
            S+   +A  +EF++TLLFVF G+GSA+ +      + +    ++ I++  G A+   V    +ISG H+NPAVT    +G  ++ L   FY  AQLLG++  + LL  +T
Sbjct:    1 SIAFSRAVFSEFLATLLFVFFGLGSALNW-----PSTVPIPTVLQISMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRATFYVAAQLLGAVAGAALLHKLT 105          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 63/189 (33.33%), Postives = 90/189 (47.62%), Query Frame = 2
Query:  149 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPT---HNXXXXXXXXXXXXXXXXXTFGLVYTVYA-TAADPKKGSLGTI--APIAIGFIVGANILAAGPFSGGSMNPARS 697
            +A  AEF++T L+VF GVGS + +       AL PS ++ IAI       +AV +    SG H NPAVT    +G  I++   + Y  AQL+G+ V + LL  V  G    T   +                  T  LV  V+A T +    GS  T+    +A+G ++G +      F+G SMNPARS
Sbjct:   25 RALFAEFLATGLYVFFGVGSVMRW-----PTAL-PS-VLQIAITFNLVTAMAVQVTWKASGAHANPAVTLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPGDIRETLGINVVRNSVSTGQAVAVELLLTLQLVLCVFASTDSRQTSGSPATMIGISVALGHLIGIH------FTGCSMNPARS 200          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
AQP2_CANFA1.688e-1137.27Aquaporin-2 (Fragment) OS=Canis familiaris GN=AQP2... [more]
AQPZ_VIBPA2.204e-1131.77Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=... [more]
NIP71_ARATH3.760e-1127.55Probable aquaporin NIP7-1 OS=Arabidopsis thaliana ... [more]
AQPZ1_RHIME3.760e-1131.79Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
AQP6_MOUSE3.760e-1134.90Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]
AQP2_MACPR3.760e-1135.45Aquaporin-2 (Fragment) OS=Macroscelides proboscide... [more]
AQP6_HUMAN8.376e-1133.33Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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