FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875410_ssr25 microsatellite FC875410_ssr25:25..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.763e-38
Identity = 87/198 (43.94%), Postives = 114/198 (57.58%), Query Frame = 2
Query:  107 AFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK-VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            A G   ++   G  +A LAE I T LFVFAGVGSA+A  K+         GL A+A+ H   + V V+ G ++SGGH+NPAVT GLA  G+IT+     Y  AQLLGS +A  LL  +      VP H                  TF L++ VYAT  DP++ ++G + P+ +G +VGAN+LA GPFSG SMNPARS
Sbjct:    5 ALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRR-AVGGMGPLLVGLVVGANVLAGGPFSGASMNPARS 201          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 88/199 (44.22%), Postives = 117/199 (58.79%), Query Frame = 2
Query:  104 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG-LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +A G   ++   G  +A +AE + T LFVF+GVGSA+A  K+         GL A+A  H   + V V+ G ++SGGH+NPAVT GLA GG IT+     Y  AQLLGS +A  LL  +TGG  AVP H                  TF L++ VYAT  D ++ ++G + P+ +G +VGANILA GP+SG SMNPARS
Sbjct:    4 LALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKLGGGGDTI-MGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVD-RRRAVGALGPLLVGLVVGANILAGGPYSGASMNPARS 200          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 87/199 (43.72%), Postives = 112/199 (56.28%), Query Frame = 2
Query:  131 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSG-LVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVY--------ATAADPKKGSLGT-IAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            FS  S ++YLAEFIST LFVF  VGSAI+   +T       +G LVA A+   F LF AV I A++SGGHVNPAVTF  A+GG+I + + +FYW +QLLG+  A   L + + G  VPT                   TF LVYTV+        +   D K+    T +  +A+G   GA +LAAG  +G SMNPARS
Sbjct:   14 FSAPSLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARS 212          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 84/207 (40.58%), Postives = 108/207 (52.17%), Query Frame = 2
Query:   98 MAIAFGRFDDSFS------LGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADA-ALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            MA    +  DSF       +G  +A LAE + T LFVF GV +A+A         A+  + L A+AI H  A  V V  G ++SGGH+NPAVT GL + G IT L  + Y  AQLL S  A  LL+ ++GG+  P H                  TF L++  YA   DP +  +  I P+  G IVGAN LA G F+G SMNPARS
Sbjct:    1 MAKLMNKLVDSFEHDEIPDVGCVRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRAIGPLLTGLIVGANSLAGGNFTGASMNPARS 206          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 78/188 (41.49%), Postives = 104/188 (55.32%), Query Frame = 2
Query:  137 LGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADA-ALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +G  +A LAE + T LFVF GV +++A         A+  + L A+AI H  A  V V  G ++SGGH+NPAVT G+ + G IT L  + Y  AQLL S +A  LL+ ++GG+  P H                  TF L++  YA   DP +  + TI P+  G IVGAN LA G F+G SMNPARS
Sbjct:   22 VGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARS 208          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 79/187 (42.25%), Postives = 100/187 (53.48%), Query Frame = 2
Query:  140 GSFKAYLAEFISTLLFVFAGVGSAIAFN-KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            G  +A LAE + T +FVF GV + +A      A AA+  + L  +AI    A  V V  G ++SGGH+NPAVT  L   G IT      Y  AQLL S +A  LL+ +TGG+A P H                  TF L++ VYAT  DP + S+    P+  G IVGAN +A G FSG SMNPARS
Sbjct:   17 GCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDP-RSSVPGFGPLLTGLIVGANTIAGGNFSGASMNPARS 202          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 76/184 (41.30%), Postives = 99/184 (53.80%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            F+  L E + T LFVF GVG+A+  +  T   +     L A+A+     + V    G +ISGGHVNPAVT  LA+GG +T+     Y  AQ+L S  A FLL+ +TGGLA P H                  TF L++ +YAT  DP+K  L    P+  G +VGAN +A    SG SMNPARS
Sbjct:   18 FRGVLGELVLTFLFVFIGVGAAMT-DGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRK-LLPGAGPLLTGLLVGANSVAGAALSGASMNPARS 199          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 73/198 (36.87%), Postives = 101/198 (51.01%), Query Frame = 2
Query:  104 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +  G   +++  G  +A   E + T LFVF GV S I   K  A  A + + + A A+     + V    G ++SGGH+NPAVT  LA+GG IT+     Y  AQL GS +A  LL+ +TGG A P H                  TF L+  + AT  DP++ +     P+  G +VGAN +A G  +G SMNPARS
Sbjct:    9 LELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGK-AAGGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTGASMNPARS 205          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 79/211 (37.44%), Postives = 111/211 (52.61%), Query Frame = 2
Query:  125 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            D+  LGS   ++A +AEFI+TLLF++  V + I +   T      ADAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  I Y +AQ LG+I    L+K          GG A   +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   31 DAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGA---NTLAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 237          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 74/207 (35.75%), Postives = 108/207 (52.17%), Query Frame = 2
Query:  125 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS-----GLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            D+  LG    ++A +AEFI+TLLF++  + + I +   T D AL+P      G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  ++T++  + Y +AQ LG+I    L+K              +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   27 DATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQT-DPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARS 231          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
TIP44_MAIZE2.763e-3843.94Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP43_ORYSJ6.154e-3844.22Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP51_MAIZE1.853e-3443.72Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
TIP41_MAIZE1.124e-3140.58Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP42_MAIZE2.504e-3141.49Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_ORYSJ3.271e-3142.25Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP43_MAIZE9.517e-3141.30Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_ORYSJ1.374e-2936.87Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
PIP21_ORYSJ1.922e-2337.44Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP25_ARATH2.510e-2335.75Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
back to top