FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875410_ssr25 microsatellite FC875410_ssr25:25..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 78/213 (36.62%), Postives = 112/213 (52.58%), Query Frame = 2
Query:  125 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMT--------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            D+  LGS   ++A +AEFI+TLLF++  V + I +   T        ADAA    G++ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG++    L+K          GG A   ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   31 DAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGA---NSLASGYSRGAGLGAEIVGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARS 239          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 79/211 (37.44%), Postives = 112/211 (53.08%), Query Frame = 2
Query:  125 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            D+  LGS   ++A +AEFI+TLLF++  V + I +   T      ADAA    G++ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+I    L+K          GG A   ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   31 DAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGA---NSLASGYSRGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARS 237          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 72/189 (38.10%), Postives = 103/189 (54.50%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +KA  AEF++TL+FV  GVGS I +        +D   +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY IAQ LG+I+ + +L +VT     GGL V T                   TF LV+T++A+    +    G+IA +AIGF V    L A  ++G SMNPARS
Sbjct:   35 WKAVSAEFLATLIFVLLGVGSTINWGGSENPLPVD---MVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARS 217          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 72/192 (37.50%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSI----VASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEFI+TLLF++  V + I   K T     D  GL+ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I         +K     L    +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   37 YRALIAEFIATLLFLYVTVATVIGHKKQTGPC--DGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARS 225          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 72/198 (36.36%), Postives = 103/198 (52.02%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS------GLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEFI+TLLF++  V + I +   T  AA  P       G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I    L+K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   41 YRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 237          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 71/198 (35.86%), Postives = 102/198 (51.52%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKM------TADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEFI+TLLF++  V + I +         T DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I    L+K              +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   40 YRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARS 236          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 70/198 (35.35%), Postives = 102/198 (51.52%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++TLLF++  V + I +   T       DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y  AQ LG+I    L+K    G         +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   40 YRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 236          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 72/198 (36.36%), Postives = 103/198 (52.02%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEFI+TLLF++  V + I +   T       DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I    L+K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   40 YRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 236          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 69/198 (34.85%), Postives = 104/198 (52.53%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++TLLF++  V + I +   +      ADAA    G++ IA   G  +F+ V   A +SGGH+NPAVTFGL L  +++++  + Y +AQ LG+I    L+K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   41 YRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 237          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 73/192 (38.02%), Postives = 102/192 (53.12%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG----LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEFI+TLLF++  V + I + K T   A    GL+ IA   G  +FV V   A ISGGH+NPAVTFGL L  ++++L  + Y IAQ  G+I    L+K    G         ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   39 WRAAIAEFIATLLFLYITVATVIGYKKETDPCA--SVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARS 227          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PIP22_MAIZE2.510e-2336.62Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_MAIZE2.510e-2337.44Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
AQP4_MOUSE3.279e-2338.10Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
PIP27_ARATH9.539e-2337.50Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP23_MAIZE1.627e-2236.36Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP22_ORYSJ1.627e-2235.86Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP26_MAIZE2.125e-2235.35Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP24_MAIZE2.125e-2236.36Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_ORYSJ2.125e-2234.85Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA2.125e-2238.02Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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