FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875410_ssr25 microsatellite FC875410_ssr25:25..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 69/198 (34.85%), Postives = 103/198 (52.02%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS------GLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++TLLF++  V + I +   T  AA  P       G++ IA   G  +F+ V   A +SGGH+NPAVTFGL L  +++++  + Y +AQ LG+I    L+K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   36 YRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 232          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 69/195 (35.38%), Postives = 103/195 (52.82%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-------TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEFI+TLLF++  V + I +   ++       G + IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG IV   ++K +        GG A   +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   37 YRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGA---NMVASGYSTGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 227          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 69/198 (34.85%), Postives = 102/198 (51.52%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++TLLF++  V + I +   T      ADAA    G++ IA   G  +F+ V   A +SGGH+NPAVT GL L  +++++  + Y  AQ LG+I    L+K     L        +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   38 YRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 234          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 69/198 (34.85%), Postives = 102/198 (51.52%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTA------DAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++TLLF++  V + I +   T       DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  I Y +AQ LG++    L+K              +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   35 YRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARS 231          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 69/189 (36.51%), Postives = 100/189 (52.91%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +KA  AEF++ L+FV   VGS I +        +D   +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY  AQ LG+I+ + +L +VT     GGL V T                   TF LV+T++A+    +    G+IA +AIGF V    L A  ++G SMNPARS
Sbjct:   38 WKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVD---MVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARS 220          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 72/199 (36.18%), Postives = 103/199 (51.76%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMT----ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEFI+TLLF++  V + I F   T       A    GL+ I+   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+     L+KV         GG A   +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   37 YRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGGGA---NMLSDGYNVGVGVGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARS 231          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 68/189 (35.98%), Postives = 100/189 (52.91%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            +KA  AEF++ L+FV   VGS I +        +D   +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY  AQ LG+I+ + +L +VT     GGL V T                   TF LV+T++A+    +    G++A +AIGF V    L A  ++G SMNPARS
Sbjct:   35 WKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVD---MVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASMNPARS 217          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 68/192 (35.42%), Postives = 102/192 (53.12%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAF-----NKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++  LF+F  +GSA+ F     N  T+ AA D    V +++  G ++        +ISG H+NPAVT GL L  QI++L  + Y IAQ +G+IVA+ +L  +T  L   ++  ++                 T  LV  V AT  D ++  LG  AP+AIGF V    L A  ++G  +NPARS
Sbjct:   11 WRAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGFSVALGHLLAIDYTGCGINPARS 198          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 70/192 (36.46%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEFI+TLLF++  V + I     T        GL+ IA   G  +FV V   A ISGGH+NPAVTFGL L  ++++   + Y +AQ LG+I    L+K         L    +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   35 YRAIIAEFIATLLFLYVTVATVIGHKNQTGPCG--GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 223          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 71/201 (35.32%), Postives = 105/201 (52.24%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT--------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEFI+TLLF++  V + I +      K+  +   D  G++ IA   G  +F+ V   A ISGGH+NPAVTFGL LG +++++  + Y IAQ  G+I  + L K           GG+    +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   39 YRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGV----NTVSDGYNKGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARS 234          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PIP25_MAIZE3.625e-2234.85Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP26_ORYSJ6.183e-2235.38Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP24_ORYSJ8.075e-2234.85Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP25_ORYSJ1.055e-2134.85Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
AQP4_NOTAL2.350e-2136.51Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
PIP26_ARATH3.069e-2136.18Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
AQP4_RAT3.069e-2135.98Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP1_PIG4.008e-2135.42Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
PIP28_ARATH5.234e-2136.46Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP27_MAIZE5.234e-2135.32Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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