FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875410_ssr25 microsatellite FC875410_ssr25:25..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 68/199 (34.17%), Postives = 103/199 (51.76%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAA----LDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-------GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++TLLF++  V + I +   +   A        G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+I     +K          GG A   ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   36 YRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGA---NSLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 230          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 66/196 (33.67%), Postives = 100/196 (51.02%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAA----LDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++TLLF++  V + I +   +   A        G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+I     +K       V      +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   36 YRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANFLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 230          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 68/189 (35.98%), Postives = 93/189 (49.21%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++   AE I TLL V  G GS         D       +V IA+  GF +   V    ++SG H+NPAVT GL + G I+IL  IFY I Q +G+I  S +LKV+T     G L +   +                 TF L+  V +   D +K +LG  AP+A+G  +    LAA  ++G SMNPARS
Sbjct:   26 WRCLAAELIGTLLLVLIGTGSCTGVQISEGDV------VVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEFRGTLCMT--SLAPGVTPPMGFLVEACITFVLILLVQSVCDDRRK-NLGNAAPVAVGLAITCCHLAAIKYTGSSMNPARS 205          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 66/192 (34.38%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++ +LF+F  +GSA+ F+       T  A  D    V +++  G ++        +ISG H+NPAVT GL L  QI++L  I Y IAQ +G+IVA+ +L  +T  L   ++  +                  T  LV  V AT  D ++  LG   P+AIGF V    L A  ++G  +NPARS
Sbjct:   11 WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARS 198          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 65/193 (33.68%), Postives = 100/193 (51.81%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S   ++A  AEF +TL +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L  I Y +AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNPARS
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 63/193 (32.64%), Postives = 99/193 (51.30%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S   ++A  AEF  T+ +VF G+G+++ +       A  P+ ++ IA+  G  L   V    ++SG H+NPAVTF   +G Q+++   IFY  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG+++ +AIGF +    L    ++G SMNPARS
Sbjct:    6 SFSFWRAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNT--LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 65/196 (33.16%), Postives = 98/196 (50.00%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAA----LDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++TLLF++  + + I +   T   A        G++ IA   G  +FV V   A ISGGH+NPAVT GL L  +++++  + Y +AQ LG+I     +K              +                  TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   38 YRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 232          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 63/187 (33.69%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++  LFVF  +GSA+ F     +        V +++  G ++        +ISG H+NPAVT GL L  QI+I   + Y IAQ +G+IVA+ +L  +T  L   ++  ++                 T  LV  V AT  D ++  LG  AP+AIG  V    L A  ++G  +NPARS
Sbjct:   11 WRAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARS 196          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S   ++A  AEF +TL +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L  I Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNPARS
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRGNLALNT--LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 65/193 (33.68%), Postives = 98/193 (50.78%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S   ++A  AEF +TL +VF G+GS++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNPARS
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGFSLALGHLFGMYYTGAGMNPARS 188          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PIP22_ARATH9.871e-2034.17Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP23_ARATH1.289e-1933.67Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
AQP_CICVR1.289e-1935.98Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP1_BOVIN1.289e-1934.38Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
MIP_SHEEP1.684e-1933.68Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_RANPI1.684e-1932.64Lens fiber major intrinsic protein OS=Rana pipiens... [more]
PIP24_ARATH2.199e-1933.16Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
AQP1_PONAB2.199e-1933.69Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
MIP_RABIT2.872e-1933.68Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
MIP_HUMAN2.872e-1933.68Lens fiber major intrinsic protein OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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