FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 68/194 (35.05%), Postives = 101/194 (52.06%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAV-PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S+   +A LAEF++TLLFVF G+GSA+ +       A  P  ++ IA+  G  + + V    ++SG H+NPAVT    +G  ++ L   FY  AQLLG++  + +L  +T     G LAV   HN                 T  LV  ++A+  + +  +LG+ A ++IGF V    L    F+G SMNPARS
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVNALHN---NATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGSPA-LSIGFSVTLGHLLGIYFTGCSMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 65/192 (33.85%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPT----HNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++T LF++  + + +  NK  +  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY   Q LG+I  + ++K    GL + +    +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   53 YRAGIAEFVATFLFLYISILTVMGVNKSASKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 241          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++T LF++  V + +  +K T+  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   IFY I Q LG+I  + ++K    GL +      +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   57 YRAGIAEFVATFLFLYITVLTVMGVSKSTSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 245          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 67/192 (34.90%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPT----HNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++T LF++  V + +  N  T+  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K    GL   T    +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   53 YRAGIAEFMATFLFLYITVLTVMGVNNSTSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 241          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 64/193 (33.16%), Postives = 100/193 (51.81%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S   ++A  AEF ++L +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L  I Y +AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNPARS
Sbjct:    6 SASFWRAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 68/194 (35.05%), Postives = 100/194 (51.55%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAV-PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S+   +A LAEF++TLLFVF G+GSA+ +       A  P  ++ IA+  G  +   V    ++SG H+NPAVT    +G  ++ L   FY  AQLLG++  + +L  +T     G LAV   HN                 T  LV  ++A+  + +  +LG+ A ++IGF V    L    F+G SMNPARS
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVNALHN---NATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGSPA-LSIGFSVTLGHLLGIYFTGCSMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 67/196 (34.18%), Postives = 100/196 (51.02%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFN-KMTADAA---LDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++TLLF++  V + I +  +   DA        G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  ++++   + Y IAQ LG+I     +K              ++                 TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   38 YRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 232          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 64/192 (33.33%), Postives = 101/192 (52.60%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++T LF++  + + +  +K ++  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K    GL +      +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   53 YRAGIAEFVATFLFLYISILTVMGVSKSSSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 241          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 59/180 (32.78%), Postives = 89/180 (49.44%), Query Frame = 2
Query:  158 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            LAEF++T   +FAG+G+     K  A           +A+  G A+   V    ++SG H+NPAVT G A+ G+        Y +AQ   +  AS +L+++ GG   P                    TF L++ + A A D +  ++G +A +A+G  +  N+L AGP SG SMNPARS
Sbjct:   60 LAEFLATFFLMFAGLGAITVEEKKGAVT------FPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLMFGGRHAPVPATLPGGAHAQSLVIEFVITFYLMFVIMAVATDDQ--AVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARS 231          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 65/192 (33.85%), Postives = 101/192 (52.60%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++T LF++  + + +  +K T+  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY I Q LG++  + ++K    GL +      +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   54 YRAGIAEFVATFLFLYITILTVMGVSKSTSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 242          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
AQP2_RAT2.872e-1935.05Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
PIP13_ORYSJ3.751e-1933.85Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP13_MAIZE3.751e-1935.42Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ3.751e-1934.90Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
MIP_BOVIN3.751e-1933.16Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP2_MOUSE3.751e-1935.05Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
PIP21_ARATH6.398e-1934.18Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP15_MAIZE6.398e-1933.33Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
NIP14_ORYSJ8.357e-1932.78Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE1.091e-1833.85Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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