FC875410

Overview
NameFC875410
Unique NameFC875410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875410_ssr25 microsatellite FC875410_ssr25:25..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 64/193 (33.16%), Postives = 98/193 (50.78%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S   ++A  AEF +TL +VF G+GS++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G +G++A +A+GF +    L    ++G  MNPARS
Sbjct:    4 SASFWRAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARS 186          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 68/193 (35.23%), Postives = 102/193 (52.85%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S+   +A LAEF++TLLFVF G+GSA+ + +        PS ++ IA+  G A+   V    ++SG H+NPAVT    +G  ++ L  +FY  AQLLG++  + LL  +T     G LAV   N                 T  LV  ++A+  + +  ++GT A ++IGF V    L    ++G SMNPARS
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSALNWPQAL------PS-VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALN--NNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVGTPA-LSIGFSVALGHLLGIHYTGCSMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S   ++A  AEF +TL +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T         X         T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNPARS
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 63/193 (32.64%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S   ++A  AEF +TL +VF G+G+++ +          P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNPARS
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRWTP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 68/196 (34.69%), Postives = 99/196 (50.51%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            SL  FKA  AEF++TL+FVF G+GSA+ +          PS L   + I+I  G A+         +SGGH+NPA+T  L +G QI++L  +FY  AQL+G+I  + +L  +      G LAV   N                 TF L   ++++    +   +G+ A ++IG  V    L    F+G SMNPARS
Sbjct:    7 SLAFFKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNLAVNALN--NNTTPGKAMVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARS 189          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 65/192 (33.85%), Postives = 101/192 (52.60%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++T LF++  + + +  +K ++  A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   IFY + Q LG+I  + ++K    GL +      +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   54 YRAGIAEFVATFLFLYITILTVMGVSKSSSKCAT--VGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 242          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 63/193 (32.64%), Postives = 98/193 (50.78%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S   ++A  AEF +TL +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L    Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G +G++A +A+GF +    L    ++G  MNPARS
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARS 188          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 63/193 (32.64%), Postives = 96/193 (49.74%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTH-----NXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKK----GSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF +TLL V   V + I   + + +     +G++ IA   G  +FV V   A ISGGH+NPAVTF + L  ++++     Y +AQ +G++  + L + + GG     H                       TF LVYTV+ +A DPK+      +  +AP+ IG  V    LA  P +G  +NPARS
Sbjct:   34 YRAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARS 222          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 65/194 (33.51%), Postives = 98/194 (50.52%), Query Frame = 2
Query:  134 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA---VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            S+  FKA  AEF++TL+FVF G+GSA+ +          PS L   + I+I  G A+         +SGGH+NPA+T  L +G QI++L  IFY  AQL+G+I  + +L  +  G A   +  +                  TF L   ++++    +   +G+ A ++IG  V    L    F+G SMNPARS
Sbjct:    7 SVAFFKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNLAVNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARS 189          
BLAST of FC875410 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 62/192 (32.29%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  146 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG----LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 697
            ++A +AEF++T LF++  + + +   +  +D+     G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++   +FY + Q LG+I  + ++K    G    L    +                  TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NPARS
Sbjct:   52 YRAGIAEFMATFLFLYITILTVMGLKR--SDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARS 240          
The following BLAST results are available for this feature:
BLAST of FC875410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
MIP_RAT1.091e-1833.16Lens fiber major intrinsic protein (Fragment) OS=R... [more]
AQP2_BOVIN1.091e-1835.23Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
MIP_CAVPO1.425e-1833.68Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_CANFA1.425e-1832.64Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP5_RAT1.425e-1834.69Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
PIP11_ORYSJ1.862e-1833.85Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
MIP_MOUSE2.431e-1832.64Lens fiber major intrinsic protein OS=Mus musculus... [more]
PIP28_ORYSJ3.176e-1832.64Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
AQP5_MOUSE4.147e-1833.51Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
PIP1_SOLLC5.417e-1832.29Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]

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Properties
Property NameValue
Genbank descriptionC31403F04EF CTVClemen1 Citrus clementina cDNA clone C31403F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875410 ID=FC875410; Name=FC875410; organism=Citrus clementina; type=EST; length=699bp
GGTGCTCGATCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACT
CGAGAGAGTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATG
GCTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAA
GGCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCG
TTGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGAT
CCATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGT
CGCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCG
TCACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATC
TTCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCT
CAAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTG
GAGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGT
TTGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATT
GGGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCC
TGGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTT
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