FC875416

Overview
NameFC875416
Unique NameFC875416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.754e-54
Identity = 102/204 (50.00%), Postives = 127/204 (62.25%), Query Frame = 1
Query:  106 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRG--KYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            SA  CG+   G +CPGG CCS+FGWCG T++YC +GCQS C+           G++G GG L  +IS   F ++L++RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF RE   ++       +PC    +YYGRGP  +SWNYNY +C           NNPD +
Sbjct:   19 SAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC--GRAIGVDLLNNPDLV 208          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.532e-53
Identity = 109/207 (52.66%), Postives = 128/207 (61.84%), Query Frame = 1
Query:  106 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            SA  CGS   G  C  G CCS+FGWCG T DYC  G CQS C         P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC    KY+GRGP  +S NYNY  C           NNPD +
Sbjct:   22 SAEQCGSQAGGARCASGLCCSKFGWCGNTNDYCGPGNCQSQC---------PGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLV 216          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.532e-53
Identity = 101/187 (54.01%), Postives = 119/187 (63.64%), Query Frame = 1
Query:  109 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN--YPCRG--KYYGRGPNSLSWNYNY 642
            A  CGS   G VCP   CCS+FGWCG T+DYC  GCQS C+   CG   P   +   G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E  GAA  DYC  +  +PC    KYYGRGP  LS+N+NY
Sbjct:   21 AEQCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQCSAAGCGGGGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY 207          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.623e-53
Identity = 108/207 (52.17%), Postives = 127/207 (61.35%), Query Frame = 1
Query:  109 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTA-GDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            A NCGS   G  C  G+CCS+FGWCG T DYC  G CQS C         P  G   G GG+LG  IS  MF+ +L++RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G    DYC P+  +PC    KY+GRGP  +S NYNY  C           NNPD +
Sbjct:   26 AQNCGSQGGGKACASGQCCSKFGWCGNTNDYCGSGNCQSQC---------PGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERG-NPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLV 220          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.641e-52
Identity = 97/183 (53.01%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  118 CGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYC--DPNYPCRG--KYYGRGPNSLSWNYNY 642
            CGS   G +CP   CCS++GWCG T+ YC  GCQS C+   CG   P   + G G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF  E  G   SDYC     +PC    KYYGRGP  +S+NYNY
Sbjct:   23 CGSQAGGALCPNCLCCSQYGWCGSTSAYCGSGCQSQCSGS-CGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY 204          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.657e-52
Identity = 101/190 (53.16%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  109 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELG-----KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPNSLSWNYNY 642
            A  CGS   G +CP   CCS +GWCG T+DYC +GCQS C+   CG      G  G GG  G      ++S+++FE LL +RND  CPAR FYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYCF  E+GA +S YC P+  +PC    KY+GRGP  LS+NYNY
Sbjct:   23 AEQCGSQAGGALCPNCLCCSSYGWCGSTSDYCGDGCQSQCDG--CGGGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATAS-YCVPSAEWPCAPDKKYFGRGPIQLSYNYNY 209          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.657e-52
Identity = 102/186 (54.84%), Postives = 124/186 (66.67%), Query Frame = 1
Query:  109 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECD-PDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPNSLSWNYNY 642
            A  CG+   G  CP   CCSR+GWCG T+D+C +GCQS C+   CG    P   +  DG  +G I+ R +FE LL +RND  CPAR FYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYCF +E     SDYC P+  +PC    KYYGRGP  LS+N+NY
Sbjct:   32 AEQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSG--CGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQN-PPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY 212          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.657e-52
Identity = 110/214 (51.40%), Postives = 129/214 (60.28%), Query Frame = 1
Query:  106 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFLLLISTI 720
            SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGP  +S NYNY  C           NNPD +   S I
Sbjct:   17 SAEQCGSQAGGALCASGLCCSKFGWCGDTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVI 216          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.064e-51
Identity = 105/189 (55.56%), Postives = 125/189 (66.14%), Query Frame = 1
Query:  109 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCG----ECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPNSLSWNYNY 642
            A  CGS   G  CP   CCSRFGWCG T+DYC +GCQS C    CG       P    +G GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC  GK YYGRGP  LS NYNY
Sbjct:   19 AEQCGSQAGGATCPNCLCCSRFGWCGSTSDYCGDGCQSQC--AGCGGGGTPVTPTPTPSGGGG-VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY 203          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.815e-51
Identity = 109/214 (50.93%), Postives = 128/214 (59.81%), Query Frame = 1
Query:  106 SAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFLLLISTI 720
            SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC    KY+GRGP  +S NYNY  C           NNPD +   S I
Sbjct:   17 SAEQCGSQAGGALCAPGLCCSKFGWCGNTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVI 216          
The following BLAST results are available for this feature:
BLAST of FC875416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_PEA1.754e-5450.00Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_TOBAC2.532e-5352.66Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI12_ORYSJ2.532e-5354.01Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_SOLTU9.623e-5352.17Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_ORYSJ1.641e-5253.01Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI9_ORYSJ3.657e-5253.16Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ3.657e-5254.84Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_SOLTU3.657e-5251.40Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIA_SECCE1.064e-5155.56Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI3_SOLTU1.815e-5150.93Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC31403F10EF CTVClemen1 Citrus clementina cDNA clone C31403F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875416 ID=FC875416; Name=FC875416; organism=Citrus clementina; type=EST; length=734bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAG
GAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAG
TGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGA
AGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCG
ACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGG
AAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGC
CAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTC
CAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCT
GCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCG
CTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTAC
TATGGCCGAGGTCCAAATTCACTCTCTTGGAATTACAATTACTTACGGTG
CGGAGAAAGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACTTCT
TGCTACTGATCAGTACTATCATTCAGTCAGCATC
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