FC875416

Overview
NameFC875416
Unique NameFC875416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.071e-27
Identity = 61/140 (43.57%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  283 GKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFL 702
            G I++R++FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF +++  +             +YYGRGP  L+   NY R            NNPD +
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLV 151          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 70/184 (38.04%), Postives = 98/184 (53.26%), Query Frame = 1
Query:  106 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD---PNYPC-RGK-YYGRGPNSLSWNYNY 642
            +A +CG    C   +CCS++G+CG  +DYC  GCQ+           P D  A +   +  I++ + F  L+   +D  C A+ FYT DAF+ AA  +P+FG +G+    KREIAAFFA   HET               +C+  E+   S +YCD     +PC  GK YYGRGP  +SWN+NY
Sbjct:   24 AAQSCG----CASDQCCSKWGFCGTGSDYCGTGCQAG----------PCDVPATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY 179          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.070e-27
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  277 ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFLLLISTI 720
            ++G I++  +F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYCF RE     S            +YGRGP  L+   NY              NNPD +   +T+
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-----------FYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATV 151          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.639e-26
Identity = 71/185 (38.38%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  106 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPNSLSWNYNY 642
            +A NCG    C    CCS+FG+CG T  YC +GCQS  C     G      G  G GG     +    F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    KYYGRGP  +SWNYNY
Sbjct:   24 AAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY 190          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 66/147 (44.90%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  280 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFLLLISTI 720
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGP  L+   NY +            NNPD +   +TI
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNQNNYEKA--GNAIRQDLVNNPDLVATDATI 157          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.879e-26
Identity = 66/147 (44.90%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  280 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFLLLISTI 720
            +G I++  +F+ +L+ RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF RE     +            YYGRGP  L+   NY              NNPD +   +T+
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-----------YYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATV 158          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 65/147 (44.22%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  280 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPNSLSWNYNYLRCXXXXXXXXXXXNNPDFLLLISTI 720
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGP  L+   NY +            NNPD +   +TI
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNRNNYEKA--GTAIGQELVNNPDLVATDATI 157          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25
Identity = 70/188 (37.23%), Postives = 92/188 (48.94%), Query Frame = 1
Query:  106 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELG---KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPNSLSWNYNY 642
            SA NCG    C    CCS++G+CG   DYC +GC+S  C     G      G  G GG  G   + +  + F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                C+  E+  AS DYCD N   +PC+   KYYGRGP  +SWNYNY
Sbjct:   28 SAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY 198          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25
Identity = 68/189 (35.98%), Postives = 95/189 (50.26%), Query Frame = 1
Query:  106 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPNSLSWNYNY 642
            +A NCG    C  G CCS++G+CG T  YC +GCQS  C     +   G      G AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP  +SWN+NY
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY 195          
BLAST of FC875416 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25
Identity = 65/182 (35.71%), Postives = 92/182 (50.55%), Query Frame = 1
Query:  118 CGSGV---VCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC-DPNYPCRG--KYYGRGPNSLSWNYNY 642
            CG+ V    C    CCS  GWCG   DYC    CQ  C+  V G      G +        +++  +F+ +  +R D  CP++ FY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C         +D+C   ++PC    KY  RGP  L+ N+NY
Sbjct:   72 CGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY 250          
The following BLAST results are available for this feature:
BLAST of FC875416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SOLLC1.071e-2743.57Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI6_ORYSJ5.317e-2738.04Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_SOLLC9.070e-2744.59Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_MAIZE2.639e-2638.38Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIP_TOBAC4.501e-2644.90Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIT_PETHY5.879e-2644.90Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIQ_TOBAC1.310e-2544.22Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI5_ORYSJ2.234e-2537.23Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ2.234e-2535.98Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI2.234e-2535.71Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31403F10EF CTVClemen1 Citrus clementina cDNA clone C31403F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875416 ID=FC875416; Name=FC875416; organism=Citrus clementina; type=EST; length=734bp
GATACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAG
GCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAG
GAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAG
TGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGA
AGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCG
ACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGG
AAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGC
CAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTC
CAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCT
GCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCG
CTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTAC
TATGGCCGAGGTCCAAATTCACTCTCTTGGAATTACAATTACTTACGGTG
CGGAGAAAGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACTTCT
TGCTACTGATCAGTACTATCATTCAGTCAGCATC
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