FC875420

Overview
NameFC875420
Unique NameFC875420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML7_ARATH (Calmodulin-like protein 7 OS=Arabidopsis thaliana GN=CML7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 57/142 (40.14%), Postives = 93/142 (65.49%), Query Frame = 3
Query:  111 VSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAE--LREAFDLYDQDKNGLISAEELNLVLNRLGIK--CSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            + P E++++F  FD+N DG I+  EL+  L+S+G    ++EL +++E +D + DG + + EF  + +T      E E  ++EAF+++DQ+ +G I+ +EL  VL+ LG+K   ++D C  MIK VD DGDG VN++EFR MM
Sbjct:    1 MDPTELKRVFQMFDKNGDGTITGKELSETLRSLGIYIPDKELTQMIEKIDVNGDGCVDIDEFGELYKTIMDEEDEEEEDMKEAFNVFDQNGDGFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNYKEFRQMM 142          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML32_ARATH (Probable calcium-binding protein CML32 OS=Arabidopsis thaliana GN=CML32 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.554e-25
Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  132 KIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAE---LREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLK 539
            +IF + D+NKDGKIS  E A  +++   S   EE+  +  ++D D D  I ++E+ +          E E   ++EAFDLYD D +G ISA E+++VL RLG K ++  C+AM++ VDADGDG V+FEEF++MM+ + K
Sbjct:    5 EIFERVDKNKDGKISWDEFAEAIRAFSPSITSEEIDNMFREIDVDGDNQIDVAEYASCLMLGGEGNKEDEDIVMKEAFDLYDIDGDGKISASEIHVVLKRLGEKQTIAECIAMVRAVDADGDGFVSFEEFKTMMSCNNK 143          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML1_ARATH (Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.554e-25
Identity = 59/140 (42.14%), Postives = 92/140 (65.71%), Query Frame = 3
Query:  114 SPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 533
            S  EM+++F++FD +KDGKIS TE   VL+++G     E++ ++ + +D D DGFI   EF    + S G    +++R +F  +D + +G ISAEE+  VL +LG +CS++ C  M++ VDADGDG VN EEF  MM+++
Sbjct:   47 SVNEMRRVFSRFDLDKDGKISQTEYKVVLRALGQERAIEDVPKIFKAVDLDGDGFIDFREFIDAYKRSGGIRS-SDIRNSFWTFDLNGDGKISAEEVMSVLWKLGERCSLEDCNRMVRAVDADGDGLVNMEEFIKMMSSN 185          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: POLC2_JUNOX (Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 58/141 (41.13%), Postives = 92/141 (65.25%), Query Frame = 3
Query:  114 SPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSL 536
            S  E++++F +FD N DGKIS +ELA +L+S+GS   E E+  +ME+ D D DG++SL EF  +   ++  A   +L+ AF ++D+D NG ISA EL   L  +G  C+++    +I  VD +GDG ++ EEF++MMT+ +
Sbjct:   23 SVHELEEVFKKFDANGDGKISGSELADILRSLGSDVGEAEVKAMMEEADADGDGYVSLQEFVDL---NNKGASVKDLKNAFKVFDRDCNGSISAAELCHTLESVGEPCTIEESKNIIHNVDKNGDGLISVEEFQTMMTSEM 160          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 54/146 (36.99%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  111 VSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT------SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIK--CSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            + P E++++F  FD+N DG+I+  EL   L+++G    +++L +++  +D + DG + + EFE++  +      + G   E ++++AF+++DQD +G I+ EEL  V+  LG+K   ++DGC  MI  VDADGDG VN++EF  MM
Sbjct:   61 IDPSELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDIDEFESLYSSIVDEHHNDGETEEEDMKDAFNVFDQDGDGFITVEELKSVMASLGLKQGKTLDGCKKMIMQVDADGDGRVNYKEFLQMM 206          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.545e-24
Identity = 52/139 (37.41%), Postives = 94/139 (67.63%), Query Frame = 3
Query:  114 SPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIK--CSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            SP +++++F  FD+N DG+I+  EL   L+++G    +++L+++++ +D + DG + ++EFE++  +      E ++R+AF+++DQD +G I+ EELN V+  LG+K   +++ C  MI  VD DGDG VN++EF  MM
Sbjct:   48 SPVDLKRVFQMFDKNGDGRITKEELNDSLENLGIFMPDKDLIQMIQKMDANGDGCVDINEFESLYGSIVEEKEEGDMRDAFNVFDQDGDGFITVEELNSVMTSLGLKQGKTLECCKEMIMQVDEDGDGRVNYKEFLQMM 186          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.613e-23
Identity = 57/137 (41.61%), Postives = 90/137 (65.69%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAE-LREAFDLYDQDKNGLISAEELNLVLNRLGIK--CSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            E+ +IF  FD N DGKI+  EL   L+++G    +++LV+++E +D + DG++ + EF  + +T      E E +REAF+++DQ+++G I+ EEL  VL  LG+K   +++ C  MI  VD DGDG VNF+EF+ MM
Sbjct:    5 ELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML31_ARATH (Probable calcium-binding protein CML31 OS=Arabidopsis thaliana GN=CML31 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  126 MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAE----LREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 533
            M +IF   D+NKDGKI   E A  ++        EE+ ++   LD D DG I   EF +    + G   + E    ++EAFDLYD D +G ISA E+++VL RLG K +++ CV M++ VD D DG VNFEEF+ MM ++
Sbjct:    1 MAEIFESVDKNKDGKILWDEFAEAIRVFSPQITSEEIDKMFIVLDVDGDGQIDDVEFASCLMVNGGGEKDTEEEVVMKEAFDLYDMDGDGKISASEIHVVLKRLGEKHTMEDCVVMVQTVDKDSDGFVNFEEFKIMMNSN 140          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 530
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D DG I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 530
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++DTD +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT+
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDTDGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDGDGQVNYEEFVGMMTS 148          
The following BLAST results are available for this feature:
BLAST of FC875420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
CML7_ARATH6.550e-2540.14Calmodulin-like protein 7 OS=Arabidopsis thaliana ... [more]
CML32_ARATH8.554e-2542.45Probable calcium-binding protein CML32 OS=Arabidop... [more]
CML1_ARATH8.554e-2542.14Calmodulin-like protein 1 OS=Arabidopsis thaliana ... [more]
POLC2_JUNOX2.489e-2441.13Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2[more]
CML5_ARATH3.251e-2436.99Calmodulin-like protein 5 OS=Arabidopsis thaliana ... [more]
CML4_ARATH5.545e-2437.41Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
CML3_ARATH1.613e-2341.61Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
CML31_ARATH2.107e-2342.14Probable calcium-binding protein CML31 OS=Arabidop... [more]
CALM_PYUSP2.107e-2343.07Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]
CALM_SUBDO2.752e-2343.07Calmodulin OS=Suberites domuncula PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC31403G02EF CTVClemen1 Citrus clementina cDNA clone C31403G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875420 ID=FC875420; Name=FC875420; organism=Citrus clementina; type=EST; length=739bp
GTCTTCTATACCGTGTCTCTTAAATTATCTTTTCCCCCAAACAGAACAAA
AGAAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAA
ACAGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCG
ACGAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTG
AAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGA
GGATCTCGATACCGACAGGGACGGATTCATCAGCCTGTCGGAGTTCGAAA
CGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAG
GCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGA
GTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGAT
GTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAAT
TTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGC
GCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATAT
CAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGT
CTACTACTTTTAATGGTAATAAACTCTGATGCATTTTCAATGGTTTAAAA
ATTGGCTTACGATATTGAAAAAAAAAAAAAAAAAAAAAA
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