FC875420

Overview
NameFC875420
Unique NameFC875420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_MAIZE (Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.669e-20
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   E    + R       E EL+EAF ++D+D+NG ISA EL  V+  LG K + +    MI+  D DGDG +N+EEF  +M
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPELLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_FAGSY (Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.669e-20
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF   + R       E EL+EAF ++D+D+NG ISA EL  V+  LG K + D    MI+  D DGDG +N+EEF  +M
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDRDGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLT-DEVDEMIREADVDGDGQINYEEFVKVM 145          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALMS_CHICK (Calmodulin, striated muscle OS=Gallus gallus GN=CCM1 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.669e-20
Identity = 56/136 (41.18%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D  G I   EF ++  R    +  E E+REAF ++D+D NG ISA EL  V+  LG K + +    MIK  D + DG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDRDGDGCITTMELGTVMRSLGQNPTEAELQDMVGEVDADGSGTIDFPEFLSLMARKMRDSDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADCNNDGQVNYEEFVRMMT 147          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML1_ORYSJ (Calmodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=CML1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.180e-20
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++DTD +G I   EF   + R       E EL+EAF ++D+D+NG ISA EL  V+  +G + + +    MI   D DGDG +N+EEF   M
Sbjct:   12 EFREAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMISEVDTDSNGNIEFKEFLGLMARKLRDKDSEEELKEAFRVFDKDQNGFISATELRHVMANIGERLTDEEVGEMISEADVDGDGQINYEEFVKCM 146          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML3_ORYSJ (Calmodulin-like protein 3 OS=Oryza sativa subsp. japonica GN=CML3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            E ++ FN FD++ DG I+  EL TV+ S+G S  E EL +++E++D D  G I   EF   + R       E ++R+AF ++D+D+NG I+ +EL  V+  L    S D    M+   D+DGDG +N+ EF  +M
Sbjct:   11 EFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIRDAFRVFDKDQNGFITPDELRHVMANLSDPLSDDELADMLHEADSDGDGQINYNEFLKVM 145          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML1_ORYSI (Calmodulin-like protein 1 OS=Oryza sativa subsp. indica GN=CML1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 56/148 (37.84%), Postives = 86/148 (58.11%), Query Frame = 3
Query:   84 ADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            AD   ++ IV   E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF   + R       E EL+EAF ++D+D+NG ISA EL  V+  +G + + +    MI   D DGDG +N+EEF   M
Sbjct:    2 ADQLSEEQIV---EFREAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMISEVDADSNGNIEFKEFLGLMARKLRDKDSEEELKEAFRVFDKDQNGFISAAELRHVMANIGERLTDEEVGEMISEADVDGDGQINYEEFVKCM 146          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CABO_LOLPE (Squidulin OS=Loligo pealeii PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVL-NRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E++  F+ FD + DG+I+  EL +V+KS+G +  + EL  ++ ++DTD +G I  +EF E + +       E E+REAF ++D+D NGLI+A EL  V+ N    K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   11 EIKDAFDMFDIDGDGQITSKELRSVMKSLGRTPSDAELEEMIREVDTDGNGTIEYAEFVEMMAKQMGPTDPEKEMREAFRVFDKDGNGLITAAELRQVMANFSDEKLTSEEISEMIREADIDGDGMVNYEEFVKMMT 147          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_PNECA (Calmodulin OS=Pneumocystis carinii PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.286e-20
Identity = 52/135 (38.52%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            E ++ F+ FD++ DG I+  EL  V++S+G +  E EL  ++ ++D D +G I   EF   + R       E E+REAF ++D+D NG+ISA EL  V+  LG K + +    MI+  D DGDG +++ EF  MM
Sbjct:   14 EFKEAFSLFDKDGDGSITTKELGIVMRSLGQNPTEAELQDMVNEVDADGNGTIDFPEFLAMMARKMKDVDSEEEIREAFKVFDKDGNGIISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGVIDYSEFVKMM 148          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: TNNC2_CAEEL (Troponin C, isoform 2 OS=Caenorhabditis elegans GN=tnc-2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 53/153 (34.64%), Postives = 83/153 (54.25%), Query Frame = 3
Query:   84 ADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFET-----ICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            AD+  K      E+ +K FN FD+   G I  T++  +L++MG +++E +L +++++ D D  G I   EF       +    +    E ELREAF LYD++ NG I+  +L  +L  L    S +    MI  +DADG G V+F+EF  MM+
Sbjct:    6 ADALEKLSADQIEQFRKYFNMFDKEGKGYIRATQVGQILRTMGQAFEERDLKQLIKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMMS 158          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_CANAL (Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFET-ICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            E ++ F+ FD++ DGKI+  EL TV++S+G +  E EL  ++ ++D + DG I   EF T + R       EAE+ EAF ++D++ +G ISA EL  +L  +G K S      MIK  D + DG ++ +EF S++
Sbjct:   12 EFKEAFSLFDKDSDGKITTKELGTVMRSLGQNPSESELTDMINEVDVNSDGSIDFPEFLTMMARKMKDTDSEAEIAEAFKVFDRNGDGKISAAELRHLLTSIGEKLSDADVDQMIKEADTNNDGEIDIQEFTSLL 146          
The following BLAST results are available for this feature:
BLAST of FC875420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
CALM_MAIZE1.669e-2039.26Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2[more]
CALM_FAGSY1.669e-2040.74Calmodulin OS=Fagus sylvatica GN=CAMF1 PE=2 SV=3[more]
CALMS_CHICK1.669e-2041.18Calmodulin, striated muscle OS=Gallus gallus GN=CC... [more]
CML1_ORYSJ2.180e-2039.26Calmodulin-like protein 1 OS=Oryza sativa subsp. j... [more]
CML3_ORYSJ6.344e-2037.78Calmodulin-like protein 3 OS=Oryza sativa subsp. j... [more]
CML1_ORYSI6.344e-2037.84Calmodulin-like protein 1 OS=Oryza sativa subsp. i... [more]
CABO_LOLPE6.344e-2040.88Squidulin OS=Loligo pealeii PE=1 SV=1[more]
CALM_PNECA8.286e-2038.52Calmodulin OS=Pneumocystis carinii PE=3 SV=1[more]
TNNC2_CAEEL1.413e-1934.64Troponin C, isoform 2 OS=Caenorhabditis elegans GN... [more]
CALM_CANAL1.846e-1937.78Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31403G02EF CTVClemen1 Citrus clementina cDNA clone C31403G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875420 ID=FC875420; Name=FC875420; organism=Citrus clementina; type=EST; length=739bp
GTCTTCTATACCGTGTCTCTTAAATTATCTTTTCCCCCAAACAGAACAAA
AGAAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAA
ACAGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCG
ACGAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTG
AAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGA
GGATCTCGATACCGACAGGGACGGATTCATCAGCCTGTCGGAGTTCGAAA
CGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAG
GCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGA
GTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGAT
GTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAAT
TTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGC
GCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATAT
CAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGT
CTACTACTTTTAATGGTAATAAACTCTGATGCATTTTCAATGGTTTAAAA
ATTGGCTTACGATATTGAAAAAAAAAAAAAAAAAAAAAA
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