FC875420

Overview
NameFC875420
Unique NameFC875420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML22_ORYSJ (Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica GN=CML22 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.323e-17
Identity = 59/180 (32.78%), Postives = 87/180 (48.33%), Query Frame = 3
Query:   33 SPKQNKRKRKAMAATTEADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICR--------TSSGAAGEAE------LREAFDLYDQDKNGLISAEELNLVLNRLGIK--CSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            SP   K+     A        ++Q      E+ ++F  FD N DG+I+  EL   L  +G     +EL  V+  +D + DG + + EF  + R        +  G A E E      +REAF ++D + +G I+ +EL  VL  LG+K   + + C  MI  VD DGDG V+F EF  MM
Sbjct:   62 SPPPPKKMSPPGAGAGAGSKKKQQQQADAAELARVFELFDRNGDGRITREELEDSLGKLGIPVPADELAAVIARIDANGDGCVDVEEFGELYRSIMAGGDDSKDGRAKEEEEEEDGDMREAFRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDGRVDFHEFLQMM 241          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM2_SOLTU (Calmodulin-2/4 (Fragment) OS=Solanum tuberosum GN=PCM2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 3
Query:  165 GKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            G I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF   + R       E EL+EAF ++D+D+NG ISA EL  V+  LG K + +    MI+  D DGDG +N++EF  +M
Sbjct:    1 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVM 121          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: TNNC3_DROME (Troponin C, isoform 3 OS=Drosophila melanogaster GN=TpnC73F PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  111 VSPEE---MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT----SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            ++PE+   +QK FN FD  K G I    +A +L+ MG  + ++ L  ++E++D D+ G +   EF  +           A + ELREAF LYD+  NG I    L  +L  L  + +      MI+ +D+DG G V+F+EF  MMT
Sbjct:    8 LTPEQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDKKILEELIEEVDEDKSGRLEFGEFVQLAAKFIVEEDAEAMQKELREAFRLYDKQGNGFIPTTCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFMEMMT 153          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: TNNC1_BALNU (Troponin C, isoform 1 OS=Balanus nubilis PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 3
Query:   81 EADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT----SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E    ++Q++V    +++ F+ FD +K G IS   ++ +L+ MG         +++E++D D  G I  SEF  +           A   EL+EAF LYD++ NG I+ + L  +L+ L  + + +  V +I+ +D DG G V+F+EF +MMT
Sbjct:    9 ETGLEKEQIVV----LRRAFDSFDRDKKGYISPETVSDILRMMGIKVSSTSFKQIIEEIDEDGSGQIEFSEFLQLAAKFLIEEDEEAMMKELKEAFRLYDKEGNGYITTQTLKEILHELDARLTAEELVGIIEEIDEDGSGTVDFDEFMAMMT 157          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML20_ORYSJ (Probable calcium-binding protein CML20 OS=Oryza sativa subsp. japonica GN=CML20 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 57/166 (34.34%), Postives = 87/166 (52.41%), Query Frame = 3
Query:   48 KRKRKAMAATTEADSNRKQLIVSPE---EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL---GIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            +R R         D ++  L +  E   E+ ++F  FD + DG IS  E+    +  G S  E E   ++   D D DGF+S+ E   +        G   LR AFD YD+D NG+I+AEEL   L RL   G+  + + C  ++  VD+DGDG ++F+EF++MM+
Sbjct:   15 RRSRSRSPPPAVLDPSQSPLSLEREAEPELIRVFRCFDTDGDGLISAAEMR---EFYGCSVDEAE--EMVAAADRDGDGFVSIEELRAVME----GGGLDALRAAFDEYDEDGNGVITAEELRRALRRLNLDGMDLTAEQCAEIVAAVDSDGDGVISFDEFKAMMS 171          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: TNNC2_DROME (Troponin C, isoform 2 OS=Drosophila melanogaster GN=TpnC47D PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 3
Query:  111 VSPEE---MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT----SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            ++PE+   +QK FN FD  K G I    +A +L+ MG  +  + L  +++++D D+ G +   EF  +           A + ELREAF LYD+  NG I    L  +L  L  + +      MI+ +D+DG G V+F+EF  MMT
Sbjct:    8 LTPEQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDRQILDELIDEVDEDKSGRLEFEEFVQLAAKFIVEEDDEAMQKELREAFRLYDKQGNGYIPTSCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFMEMMT 153          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 44/139 (31.65%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAG--EAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 533
            E+++IF  FD+NKDG ++  EL ++L+S+G    +++L  +++  D + +G +  SEF  +           + +L+  F ++D+D NG I+A EL   + +LG   + +    MIK  D DGDG ++F+EF   +T++
Sbjct:   20 ELREIFRSFDQNKDGSLTELELGSLLRSLGLKPSQDQLDTLIQKADRNNNGLVEFSEFVALVEPDLVKCPYTDDQLKAIFRMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAITSA 158          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: TNNC1_DROME (Troponin C, isoform 1 OS=Drosophila melanogaster GN=TpnC41C PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  126 MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT----SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            ++  FN FD  K+G I+   + T+L  +G    +  L  ++ ++D D  G I   EF T+           A  AEL+EAF LYD++ NG I+   L  +L  L  K + D    MI+ +D+DG G V+F+EF  +MT
Sbjct:   13 LRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLADIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEGNGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVMT 150          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALL_DROME (Calmodulin-related protein 97A OS=Drosophila melanogaster GN=And PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 48/136 (35.29%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E +  F QFD+   GKI+  EL T+++++G +  E EL  ++ + + + +G ++ +EF  I  +       E E+REAF ++D+D +G IS  EL  V+  LG K + +    MI+  D DGDG +N+EEF  M++
Sbjct:   11 EFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMIS 146          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALL5_HUMAN (Calmodulin-like protein 5 OS=Homo sapiens GN=CALML5 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  111 VSPEE---MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            ++PEE    +K F+  D + +G I+  EL   LK+ G +  E +L +++ ++D+D DG IS  EF T  + +   AG  +L+ AF  +DQD +G I+ +EL   +  LG     +   AMI+  D D DG VN+EEF  M+
Sbjct:    5 LTPEEEAQYKKAFSAVDTDGNGTINAQELGAALKATGKNLSEAQLRKLISEVDSDGDGEISFQEFLTAAKKAR--AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 143          
The following BLAST results are available for this feature:
BLAST of FC875420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
CML22_ORYSJ1.323e-1732.78Probable calcium-binding protein CML22 OS=Oryza sa... [more]
CALM2_SOLTU1.728e-1739.67Calmodulin-2/4 (Fragment) OS=Solanum tuberosum GN=... [more]
TNNC3_DROME2.256e-1734.93Troponin C, isoform 3 OS=Drosophila melanogaster G... [more]
TNNC1_BALNU2.947e-1732.03Troponin C, isoform 1 OS=Balanus nubilis PE=1 SV=1[more]
CML20_ORYSJ3.849e-1734.34Probable calcium-binding protein CML20 OS=Oryza sa... [more]
TNNC2_DROME8.574e-1734.25Troponin C, isoform 2 OS=Drosophila melanogaster G... [more]
CML18_ARATH8.574e-1731.65Probable calcium-binding protein CML18 OS=Arabidop... [more]
TNNC1_DROME1.120e-1634.78Troponin C, isoform 1 OS=Drosophila melanogaster G... [more]
CALL_DROME1.463e-1635.29Calmodulin-related protein 97A OS=Drosophila melan... [more]
CALL5_HUMAN1.463e-1636.17Calmodulin-like protein 5 OS=Homo sapiens GN=CALML... [more]

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Properties
Property NameValue
Genbank descriptionC31403G02EF CTVClemen1 Citrus clementina cDNA clone C31403G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875420 ID=FC875420; Name=FC875420; organism=Citrus clementina; type=EST; length=739bp
GTCTTCTATACCGTGTCTCTTAAATTATCTTTTCCCCCAAACAGAACAAA
AGAAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAA
ACAGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCG
ACGAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTG
AAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGA
GGATCTCGATACCGACAGGGACGGATTCATCAGCCTGTCGGAGTTCGAAA
CGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAG
GCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGA
GTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGAT
GTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAAT
TTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGC
GCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATAT
CAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGT
CTACTACTTTTAATGGTAATAAACTCTGATGCATTTTCAATGGTTTAAAA
ATTGGCTTACGATATTGAAAAAAAAAAAAAAAAAAAAAA
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