FC875420

Overview
NameFC875420
Unique NameFC875420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPKC_ARATH (Calcium-dependent protein kinase 12 OS=Arabidopsis thaliana GN=CPK12 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 50/163 (30.67%), Postives = 75/163 (46.01%), Query Frame = 3
Query:   45 NKRKRKAMAATTEADSNRKQLIVSPEE---MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            NK K+ A+    E         +S EE   ++++F   D +K G I+  EL   ++ +GS   E E+  ++   D D  G I   EF       +    E  L  AF  +D+D +G I+ EEL       GI  S      MIK +D D DG +++ EF +MM
Sbjct:  306 NKLKKMALRVIAER--------LSEEEIGGLKELFKMIDTDKSGTITFEELKDSMRRVGSELMESEIQELLRAADVDESGTIDYGEFLAATIHLNKLEREENLVAAFSFFDKDASGYITIEELQQAWKEFGINDS--NLDEMIKDIDQDNDGQIDYGEFVAMM 458          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALL6_HUMAN (Calmodulin-like protein 6 OS=Homo sapiens GN=CALML6 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 3
Query:   63 AMAATTEADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAG--EAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            A +  T  D   +      +E + +F  FDE  +G++   EL  ++  +G +  + EL  + +D+D D  GF +   F  +       A   E+ELR AF ++D++  G I    L  VL   G   +      M+K  D DGD  +++EEF +MMT
Sbjct:   17 AESCQTTTDMTERLSAEQIKEYKGVFEMFDEEGNGEVKTGELEWLMSLLGINPTKSELASMAKDVDRDNKGFFNCDGFLALMGVYHEKAQNQESELRAAFRVFDKEGKGYIDWNTLKYVLMNAGEPLNEVEAEQMMKEADKDGDRTIDYEEFVAMMT 173          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: TNNC_TODPA (Troponin C OS=Todarodes pacificus PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 41/135 (30.37%), Postives = 70/135 (51.85%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETIC-RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            +  + F   D+  +G +S  EL  + KS+     +++L + ++++D D  G I   +F+ +  R       E ELR AF + D++  G+I  E+L  +L  LG   + D    MI   D DG G V++EEF ++M
Sbjct:   12 DAHQAFKLHDKKDEGAVSNKELTNLFKSLALHVSDDKLQQWVDEMDEDATGVIRWEKFKILFERKVQEDEDERELRSAFRVLDKNNQGVIDVEDLRWILKSLGDDLNDDEIQDMINETDTDGSGTVDYEEFSALM 146          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPK4_ARATH (Calcium-dependent protein kinase 4 OS=Arabidopsis thaliana GN=CPK4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 51/165 (30.91%), Postives = 76/165 (46.06%), Query Frame = 3
Query:   39 KQNKRKRKAMAATTEADSNRKQLIVSPEE---MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            + NK K+ A+    E         +S EE   ++++F   D +  G I+  EL   LK +GS   E E+  +M+  D D  G I   EF       +    E  L  AF  +D+D +G I+ +EL       G+ C       MIK +D D DG ++F EF +MM
Sbjct:  307 QMNKIKKMALRVIAER--------LSEEEIGGLKELFKMIDTDNSGTITFEELKAGLKRVGSELMESEIKSLMDAADIDNSGTIDYGEFLAATLHINKMEREENLVVAFSYFDKDGSGYITIDELQQACTEFGL-CDTP-LDDMIKEIDLDNDGKIDFSEFTAMM 461          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPK2_ORYSJ (Calcium-dependent protein kinase isoform 2 OS=Oryza sativa subsp. japonica GN=CPK2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 49/159 (30.82%), Postives = 80/159 (50.31%), Query Frame = 3
Query:   54 KRKAMAATTEADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELN--LVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            K K MA    A +  ++ I   + ++++F   D +  G I+  EL   L  +GS   E E+ ++ME  D D +G I   EF T          +  L +AF  +D+D +G I+ +EL   L+ + +G   ++     +I  VD D DG +N+EEF +MM
Sbjct:  369 KLKKMALKVIASNLNEEEI---KGLKQMFTNMDTDNSGTITYEELKAGLAKLGSKLSEAEVKQLMEAADVDGNGSIDYVEFITATMHRHKLERDEHLFKAFQYFDKDNSGFITRDELESALIEHEMGDTSTIKD---IISEVDTDNDGRINYEEFCAMM 521          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CABP5_HUMAN (Calcium-binding protein 5 OS=Homo sapiens GN=CABP5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 42/142 (29.58%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-----ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNR-LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            EE+++ F +FD+++DG IS  +L  ++++MG    E EL+ + + +  +  G +   +F       +   ++G  G  E+R+AF  +D + +G I+  EL   + R LG + +      +++  D +GDG V+FEEF  MM+
Sbjct:   31 EELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFDDFVELMTPKLLAETAGMIGVQEMRDAFKEFDTNGDGEITLVELQQAMQRLLGERLTPREISEVVREADVNGDGTVDFEEFVKMMS 172          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPKN_ARATH (Calcium-dependent protein kinase 23 OS=Arabidopsis thaliana GN=CPK23 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 49/157 (31.21%), Postives = 77/157 (49.04%), Query Frame = 3
Query:   54 KRKAMAATTEADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            K K +A    A S  ++ I   + ++ +F   D N+ G I+  +L T L  + S   E E+ +++E  D D +G I   EF +          +  + +AF   D+DKNG I+ +EL   +   G+         +I  VD D DG +NFEEFR+MM
Sbjct:  353 KLKKLALKVSAVSLSEEEI---KGLKTLFANMDTNRSGTITYEQLQTGLSRLRSRLSETEVQQLVEASDVDGNGTIDYYEFISATMHRYKLHHDEHVHKAFQHLDKDKNGHITRDELESAMKEYGMGDEAS-IKEVISEVDTDNDGKINFEEFRAMM 505          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPKL_ARATH (Calcium-dependent protein kinase 21 OS=Arabidopsis thaliana GN=CPK21 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 49/160 (30.63%), Postives = 78/160 (48.75%), Query Frame = 3
Query:   45 NKRKRKAMAATTEADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            NK K+ A+    E+ S  +      + ++ +F   D +K G I+  EL T L  +GS   E E+ ++ME  D D +G I   EF +          +  + +AF  +D+D +G I+ +EL   +   G+         +I  VD D DG +NFEEF +MM
Sbjct:  363 NKLKKLALKVIAESLSEEEI-----KGLKTMFANIDTDKSGTITYEELKTGLTRLGSRLSETEVKQLMEAADVDGNGTIDYYEFISATMHRYKLDRDEHVYKAFQHFDKDNSGHITRDELESAMKEYGMGDEA-SIKEVISEVDTDNDGRINFEEFCAMM 516          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CABP2_BOVIN (Calcium-binding protein 2 OS=Bos taurus GN=CABP2 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 46/140 (32.86%), Postives = 75/140 (53.57%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLD---TDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNR-LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            EE+Q  F +FD ++DG I   EL   ++++G    E EL+ + + +     D + F+ L   + +  T+    G  ELR+AF  +D + +G IS  EL   L   LG + S      +++ +D +GDG V+FEEF  MM+
Sbjct:   24 EELQAAFQEFDRDRDGYIGYQELGACMRTLGYMPTEMELIEISQQISGGKVDFEDFVELMGPKLLAETAD-MIGVRELRDAFREFDTNGDGCISLGELRAALKALLGERLSQREVDEILRDIDLNGDGLVDFEEFVRMMS 162          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPK1_PLAFK (Calcium-dependent protein kinase 1 OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CPK1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 46/144 (31.94%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELA---TVLKSMGSSYKE-----EELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGI-KCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            +E+  IF + D+N DG++   EL     +L+S  +   E     EE+  +++++D D++G+I  SEF ++C        E  LR+AF+L+D DK+G I+ EEL    N  G+   S      ++   D + D  ++F+EF +MM
Sbjct:  375 KELTDIFKKLDKNGDGQLDKKELIEGYNILRSFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRDAFNLFDTDKSGKITKEEL---ANLFGLTSISEQMWNEVLGEADKNKDNMIDFDEFVNMM 515          
The following BLAST results are available for this feature:
BLAST of FC875420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
CDPKC_ARATH7.511e-1330.67Calcium-dependent protein kinase 12 OS=Arabidopsis... [more]
CALL6_HUMAN7.511e-1329.30Calmodulin-like protein 6 OS=Homo sapiens GN=CALML... [more]
TNNC_TODPA9.810e-1330.37Troponin C OS=Todarodes pacificus PE=1 SV=3[more]
CDPK4_ARATH9.810e-1330.91Calcium-dependent protein kinase 4 OS=Arabidopsis ... [more]
CDPK2_ORYSJ9.810e-1330.82Calcium-dependent protein kinase isoform 2 OS=Oryz... [more]
CABP5_HUMAN9.810e-1329.58Calcium-binding protein 5 OS=Homo sapiens GN=CABP5... [more]
CDPKN_ARATH1.281e-1231.21Calcium-dependent protein kinase 23 OS=Arabidopsis... [more]
CDPKL_ARATH1.281e-1230.63Calcium-dependent protein kinase 21 OS=Arabidopsis... [more]
CABP2_BOVIN1.281e-1232.86Calcium-binding protein 2 OS=Bos taurus GN=CABP2 P... [more]
CDPK1_PLAFK1.673e-1231.94Calcium-dependent protein kinase 1 OS=Plasmodium f... [more]

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Properties
Property NameValue
Genbank descriptionC31403G02EF CTVClemen1 Citrus clementina cDNA clone C31403G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875420 ID=FC875420; Name=FC875420; organism=Citrus clementina; type=EST; length=739bp
GTCTTCTATACCGTGTCTCTTAAATTATCTTTTCCCCCAAACAGAACAAA
AGAAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAA
ACAGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCG
ACGAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTG
AAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGA
GGATCTCGATACCGACAGGGACGGATTCATCAGCCTGTCGGAGTTCGAAA
CGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAG
GCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGA
GTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGAT
GTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAAT
TTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGC
GCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATAT
CAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGT
CTACTACTTTTAATGGTAATAAACTCTGATGCATTTTCAATGGTTTAAAA
ATTGGCTTACGATATTGAAAAAAAAAAAAAAAAAAAAAA
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