FC875420

Overview
NameFC875420
Unique NameFC875420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CABP5_MOUSE (Calcium-binding protein 5 OS=Mus musculus GN=Cabp5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 42/142 (29.58%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-----ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNR-LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            +E+++ F +FD+++DG IS  +L  ++++MG    E EL  + + +  +  G +   +F       +   ++G  G  E+R+AF  +D + +G I+  EL   + R LG K +      +++  D +GDG V+FEEF  MM+
Sbjct:   31 DELREAFLEFDKDQDGFISYKDLGNLMRTMGYMPTEMELTELGQQIRMNLGGRVDFEDFVELMTPKLLAETAGMIGVQEMRDAFKEFDANGDGEITLAELQQAMQRLLGEKLTPREIAEVVQEADINGDGTVDFEEFVKMMS 172          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: LPS1A_LYTPI (Calcium-binding protein LPS1-alpha OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 3
Query:  129 QKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICR--TSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCV-AMIKPVDADGDGNVNFEEFRSMMTTSLKPGPAP 554
            Q+  + +D NKDG +S  EL  ++     ++ EE    ++  LD + DG +   EF       T        E+++ FD  D+D NG IS +ELN  +  +  K  VDG    +I+  D DGDG+VN EEF   +   L  G  P
Sbjct:   22 QEFKDNYDTNKDGTVSCAELVKLM-----NWTEEMAQNIIARLDVNSDGHMQFDEFILYMEGSTKERLYSSDEIKQMFDDLDKDGNGRISPDELNKGVREIYTKV-VDGMANKLIQEADKDGDGHVNMEEFFDTLVVKLPIGMGP 160          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML32_ORYSJ (Probable calcium-binding protein CML32 OS=Oryza sativa subsp. japonica GN=CML32 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  126 MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT----------SSGAAGEA---------ELREAFDLYDQDKNGLISAEELNLVLNRLGI--KCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLKPGP 548
            ++++F+ FD N DG+I++ ELA  L ++G     + L   +     +    +   +F+ + R            + AAGE          E+REAF ++D D +G ISA EL  VL +LG+    S+     MI  VD + DG V+F EF+SMM      GP
Sbjct:   35 LRRVFDLFDRNGDGEITVDELAQALDALGLVADRDGLAATVSAYVPEGAAGLRFEDFDALHRALGDALFGSLDGAAAAGEPGGGGGDEEEEMREAFKVFDVDGDGFISASELQEVLKKLGLPEAGSLATVREMICNVDRNSDGRVDFGEFKSMMQGITVWGP 196          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPKB_ARATH (Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 51/165 (30.91%), Postives = 76/165 (46.06%), Query Frame = 3
Query:   39 KQNKRKRKAMAATTEADSNRKQLIVSPEE---MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            + NK K+ A+    E         +S EE   ++++F   D +  G I+  EL   LK +GS   E E+  +M+  D D  G I   EF       +    E  L  AF  +D+D +G I+ +EL       G+ C       MIK +D D DG ++F EF +MM
Sbjct:  308 QMNKIKKMALRVIAER--------LSEEEIGGLKELFKMIDTDNSGTITFEELKAGLKRVGSELMESEIKSLMDAADIDNSGTIDYGEFLAATLHMNKMEREEILVAAFSDFDKDGSGYITIDELQSACTEFGL-CDTP-LDDMIKEIDLDNDGKIDFSEFTAMM 462          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAA-GEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEF-RSMMTTSL 536
            +E+++ F+ FD +  G I   EL   ++++G   K+EE+ +++ D+D    G I   EF  +  +  G      E+ +AF L+D D  G I+ + L  V   LG   + +    M    D +GDG ++ +EF R M  TSL
Sbjct:   28 QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKAGSGTIDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIMKKTSL 168          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 42/134 (31.34%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  114 SPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFR 515
            S    +++F++ D NKDGK+ + EL   LK+MG    +    +++   DT++DG +   EF            E +++ AF   D++K+G I + E+   L  LGIK S+D    ++K +D+DG   V++ E+R
Sbjct:   20 SQSRYEELFHKLDVNKDGKVDILELQEGLKAMGMEVGKGAEEKIVAAGDTNKDGHLDFGEFIRYLEEH-----EKKMKIAFTSLDKNKDGKIESAEIMNSLKVLGIKISLDHADKILKSMDSDGTLTVDWNEWR 148          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALGL_BOTIN (Calglandulin OS=Bothrops insularis PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 40/137 (29.20%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT--SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E + IF  FDE  +G +   +L +++  +G +  + +L  + +D+D D+ G  +   F  +           + ELR AF ++D++  G I  + L  VL   G   +      M+K  D DGDG +++EEF +MMT
Sbjct:   12 EYKGIFEMFDEEGNGLVKTDDLESLMSLVGINPTKRDLANMAKDVDKDKKGTFNCDGFLALMGIYHEKSKNQDEELRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEQEAELMMKEADKDGDGTIDYEEFVAMMT 148          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALGL_TROCA (Calglandulin OS=Tropidechis carinatus PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 40/137 (29.20%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT--SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E + IF  FDE  +G +   +L +++  +G +  + +L  + +D+D D+ G  +   F  +           + ELR AF ++D++  G I  + L  VL   G   +      M+K  D DGDG +++EEF +MMT
Sbjct:   12 EYKGIFEMFDEEGNGLVKTDDLESLMSLIGINPTKRDLANMAKDVDKDKKGTFNCEGFLVLMGIYHEKSKNQDEELRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMMT 148          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALGL_PSETE (Calglandulin OS=Pseudonaja textilis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 40/137 (29.20%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT--SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E + IF  FDE  +G +   +L +++  +G +  + +L  + +D+D D+ G  +   F  +           + ELR AF ++D++  G I  + L  VL   G   +      M+K  D DGDG +++EEF +MMT
Sbjct:   12 EYKGIFEMFDEEGNGLVKTDDLESLMSLIGINPTKRDLANMAKDVDKDKKGTFNCDGFLVLMGIYHEKSKNQDEELRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMMT 148          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALGL_PSEPO (Calglandulin OS=Pseudechis porphyriacus PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 40/137 (29.20%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRT--SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E + IF  FDE  +G +   +L +++  +G +  + +L  + +D+D D+ G  +   F  +           + ELR AF ++D++  G I  + L  VL   G   +      M+K  D DGDG +++EEF +MMT
Sbjct:   12 EYKGIFEMFDEEGNGLVKTDDLESLMSLIGINPTKRDLANMAKDVDKDKKGTFNCDGFLVLMGIYHEKSKNQDEELRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMMT 148          
The following BLAST results are available for this feature:
BLAST of FC875420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
CABP5_MOUSE2.185e-1229.58Calcium-binding protein 5 OS=Mus musculus GN=Cabp5... [more]
LPS1A_LYTPI2.854e-1233.10Calcium-binding protein LPS1-alpha OS=Lytechinus p... [more]
CML32_ORYSJ2.854e-1232.10Probable calcium-binding protein CML32 OS=Oryza sa... [more]
CDPKB_ARATH2.854e-1230.91Calcium-dependent protein kinase 11 OS=Arabidopsis... [more]
CATR_DUNSA2.854e-1230.50Caltractin OS=Dunaliella salina PE=2 SV=1[more]
SCM1B_XENLA3.728e-1231.34Calcium-binding mitochondrial carrier protein SCaM... [more]
CALGL_BOTIN3.728e-1229.20Calglandulin OS=Bothrops insularis PE=2 SV=1[more]
CALGL_TROCA4.869e-1229.20Calglandulin OS=Tropidechis carinatus PE=2 SV=1[more]
CALGL_PSETE4.869e-1229.20Calglandulin OS=Pseudonaja textilis PE=2 SV=1[more]
CALGL_PSEPO4.869e-1229.20Calglandulin OS=Pseudechis porphyriacus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31403G02EF CTVClemen1 Citrus clementina cDNA clone C31403G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875420 ID=FC875420; Name=FC875420; organism=Citrus clementina; type=EST; length=739bp
GTCTTCTATACCGTGTCTCTTAAATTATCTTTTCCCCCAAACAGAACAAA
AGAAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAA
ACAGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCG
ACGAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTG
AAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGA
GGATCTCGATACCGACAGGGACGGATTCATCAGCCTGTCGGAGTTCGAAA
CGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAG
GCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGA
GTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGAT
GTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAAT
TTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGC
GCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATAT
CAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGT
CTACTACTTTTAATGGTAATAAACTCTGATGCATTTTCAATGGTTTAAAA
ATTGGCTTACGATATTGAAAAAAAAAAAAAAAAAAAAAA
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