FC875420

Overview
NameFC875420
Unique NameFC875420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPK_DAUCA (Calcium-dependent protein kinase OS=Daucus carota PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   45 NKRKRKAMAATTEADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            NK K+ A+    E+ S  +      + ++ +F   D +K G I+  EL + L  +GS   E E+ ++M+  D D +G I   EF  I  T      E+   +AF  +D+D +G I+ +EL   +   G+         +I  VD+D DG +N++EF +MM
Sbjct:  365 NKLKQLALKVIAESLSEEEI-----KGLKSMFANMDTDKSGTITYEELKSGLARLGSKLSEVEVQQLMDAADVDGNGTIDYLEF--ITATMHRHKLESYEHQAFQYFDKDNSGFITKDELESAMKEYGMGDEAT-IKDIISEVDSDNDGRINYDEFCAMM 516          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPK1_PLAYO (Calcium-dependent protein kinase 1 OS=Plasmodium yoelii yoelii GN=CPK1 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 48/153 (31.37%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELA---TVLKSMGSSYKE-----EELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNR--LGIKCSVDGCVA--------MIKPVDADGDGNVNFEEFRSMM 524
            +E+  IF + D+N DG++   EL     VL++  +   E     EE+  +++++D D++G+I  SEF ++C        E  LR AF+L+D DK+G I+ EEL  V+ R       S+ G  +        ++   D + D  ++F+EF SMM
Sbjct:  374 KELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANVIIRGFYFFTYSLFGLTSVSEKTWNDVLGEADQNKDNMIDFDEFVSMM 526          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDC31_YEAST (Cell division control protein 31 OS=Saccharomyces cerevisiae GN=CDC31 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 3
Query:   93 NRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEA-ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 533
            N + L    +E+ + F+ FD N DG +   EL   +K++G    + E++ ++++ D++    +   +F  +            E++ AF L+D D  G IS + L  V   LG   + +   AMI+  D DGDG +N  EF ++ T S
Sbjct:   14 NSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAICTDS 161          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 40/128 (31.25%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  132 KIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFR 515
            ++F++ D NKDGK+ + EL   LK+MG +  +    +++   DT++DG +   EF            E +++ AF   D++K+G I + E+   L  LGI  S++    ++K +DADG   V++ E+R
Sbjct:   26 ELFHKLDVNKDGKVDIVELQEGLKAMGMAVGKGAEEKIVAAGDTNKDGHLDFGEFIRYLEEH-----EKKMKIAFTSLDKNKDGKIESAEIMNSLKTLGINISLEHAEKILKSMDADGTLTVDWNEWR 148          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: LPS1B_LYTPI (Calcium-binding protein LPS1-beta (Fragment) OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 3
Query:  129 QKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICR--TSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSL 536
            Q+  + +D NKDG +S  ELA ++        EEE  R++  +D + DG +   EF       T        E+++ FD  D+D NG IS +EL+  +  +  K        +I+  D DGDG+VN EEF   +   L
Sbjct:   22 QEFKDNYDTNKDGTVSCAELAKLMDC-----PEEEAQRIITGVDVNCDGRMQFDEFLLYMEGYTKERLYSSDEIKQMFDDLDKDGNGRISPDELSKGVGEISTKLVEGMANKLIQEADKDGDGHVNMEEFVDTLVAKL 154          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML40_ARATH (Probable calcium-binding protein CML40 OS=Arabidopsis thaliana GN=CML40 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 42/139 (30.22%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELATVLKSMGSSYK----EEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            +E Q++F+ FD++  GK+S++ +   + ++ S  +    +E+      +  TD D  + L +F  +      A  E +L+EAF LY++ +   I+ + L  +L+ LG   S+  C  MI   D + DG +NF+EFR+MM
Sbjct:   10 DEYQRVFSCFDKSHQGKVSVSTIERCVDAIKSGKRAVVDQEDTTNPNPEESTD-DKSLELEDFVKLVEEGEEADKEKDLKEAFKLYEESEG--ITPKSLKRMLSLLGESKSLKDCEVMISQFDINRDGIINFDEFRAMM 145          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CML16_ARATH (Probable calcium-binding protein CML16 OS=Arabidopsis thaliana GN=CML16 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 38/141 (26.95%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  120 EEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAA---GEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 533
            ++++ IF +FD +KDG ++  ELA +L+S+G   + +++  ++  +D + +G +   E                + +L E F  +D+D NG I+A EL   + ++G   +      M+   D++GDG ++F EF  +M  S
Sbjct:   11 KQLKDIFARFDMDKDGSLTQLELAALLRSLGIKPRSDQISLLLNQIDRNGNGSVEFDELVVAILPDINEEVLINQEQLMEVFRSFDRDGNGSITAAELAGSMAKMGHPLTYRELTEMMTEADSNGDGVISFNEFSHIMAKS 151          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPKO_ARATH (Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana GN=CPK24 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 41/134 (30.60%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  132 KIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVL--NRLGIKCSVDGCVA-MIKPVDADGDGNVNFEEFRSMM 524
            ++F   D +K+G ++  EL   LK +G    + ++  +M+  DTD +G +S  EF T+         +  L+EAF  +D++ NG I  +EL + L  ++LG     D  +  +   VD + DG ++F+EF++MM
Sbjct:  374 QMFQTMDTDKNGHLTFEELRDGLKKIGQVVPDGDVKMLMDAADTDGNGMLSCDEFVTLSIHLKRMGCDEHLQEAFKYFDKNGNGFIELDELKVALCDDKLGHANGNDQWIKDIFFDVDLNKDGRISFDEFKAMM 507          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: TNNC_BRALA (Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEF-ETICRTSSGAAGEA---ELREAFDLYDQDKNGLISAEELNLVLNR-LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 524
            E +  F+ FDE+  G IS  EL T++K +G S   EEL ++++++D D  G I   EF E + R    +  E    ELR AF + D++ +G I  +E   + +   G   + D  +  +   D + DG  ++EE++ ++
Sbjct:   18 EFKMAFDMFDEDGGGDISTKELGTIMKRLGMSISREELQQMIDEVDEDASGTIDFEEFLEMMARAMQDSEREIPDDELRAAFRVLDKNGDGFIDKDEFRALASECAGDDLTDDELLEFMMDYDGNRDGRFDYEEWKEII 156          
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CDPKX_ARATH (Calcium-dependent protein kinase 33 OS=Arabidopsis thaliana GN=CPK33 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 49/164 (29.88%), Postives = 77/164 (46.95%), Query Frame = 3
Query:   45 NKRKRKAMAATTEADSNRKQLIVSPEEMQKI---FNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCV-AMIKPVDADGDGNVNFEEFRSMM 524
            NK K+ A+    E         +  EE+Q +   F   D +  G I+  EL   L  +GS   E E+ ++M+  D D +G I   EF T             + +AF  +D+D +G I+ +EL   L   G+    D  +  ++  VDAD DG +N++EF +MM
Sbjct:  357 NKLKKLALKVIAEN--------IDTEEIQGLKAMFANIDTDNSGTITYEELKEGLAKLGSRLTEAEVKQLMDAADVDGNGSIDYIEFITATMHRHRLESNENVYKAFQHFDKDGSGYITTDELEAALKEYGM--GDDATIKEILSDVDADNDGRINYDEFCAMM 510          
The following BLAST results are available for this feature:
BLAST of FC875420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
CDPK_DAUCA8.305e-1230.00Calcium-dependent protein kinase OS=Daucus carota ... [more]
CDPK1_PLAYO8.305e-1231.37Calcium-dependent protein kinase 1 OS=Plasmodium y... [more]
CDC31_YEAST1.085e-1128.38Cell division control protein 31 OS=Saccharomyces ... [more]
SCMC1_XENTR1.417e-1131.25Calcium-binding mitochondrial carrier protein SCaM... [more]
LPS1B_LYTPI1.417e-1131.88Calcium-binding protein LPS1-beta (Fragment) OS=Ly... [more]
CML40_ARATH1.417e-1130.22Probable calcium-binding protein CML40 OS=Arabidop... [more]
CML16_ARATH1.417e-1126.95Probable calcium-binding protein CML16 OS=Arabidop... [more]
CDPKO_ARATH1.417e-1130.60Calcium-dependent protein kinase 24 OS=Arabidopsis... [more]
TNNC_BRALA1.850e-1130.22Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1[more]
CDPKX_ARATH1.850e-1129.88Calcium-dependent protein kinase 33 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC31403G02EF CTVClemen1 Citrus clementina cDNA clone C31403G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875420 ID=FC875420; Name=FC875420; organism=Citrus clementina; type=EST; length=739bp
GTCTTCTATACCGTGTCTCTTAAATTATCTTTTCCCCCAAACAGAACAAA
AGAAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAA
ACAGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCG
ACGAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTG
AAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGA
GGATCTCGATACCGACAGGGACGGATTCATCAGCCTGTCGGAGTTCGAAA
CGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAG
GCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGA
GTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGAT
GTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAAT
TTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGC
GCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATAT
CAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGT
CTACTACTTTTAATGGTAATAAACTCTGATGCATTTTCAATGGTTTAAAA
ATTGGCTTACGATATTGAAAAAAAAAAAAAAAAAAAAAA
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