FC875420

Overview
NameFC875420
Unique NameFC875420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_TORCA (Calmodulin OS=Torpedo californica PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_SHEEP (Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_RAT (Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_RABIT (Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_PONAB (Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_PERFV (Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_ONCSP (Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_MOUSE (Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
[Close]
BLAST of FC875420 vs. ExPASy Swiss-Prot
Match: CALM_HUMAN (Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:  123 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDRDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 527
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
The following BLAST results are available for this feature:
BLAST of FC875420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
CALM_XENLA1.784e-2242.65Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2[more]
CALM_TORCA1.784e-2242.65Calmodulin OS=Torpedo californica PE=1 SV=2[more]
CALM_SHEEP1.784e-2242.65Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3[more]
CALM_RAT1.784e-2242.65Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2[more]
CALM_RABIT1.784e-2242.65Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 S... [more]
CALM_PONAB1.784e-2242.65Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3[more]
CALM_PERFV1.784e-2242.65Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3[more]
CALM_ONCSP1.784e-2242.65Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2[more]
CALM_MOUSE1.784e-2242.65Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2[more]
CALM_HUMAN1.784e-2242.65Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31403G02EF CTVClemen1 Citrus clementina cDNA clone C31403G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875420 ID=FC875420; Name=FC875420; organism=Citrus clementina; type=EST; length=739bp
GTCTTCTATACCGTGTCTCTTAAATTATCTTTTCCCCCAAACAGAACAAA
AGAAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAA
ACAGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCG
ACGAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTG
AAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGA
GGATCTCGATACCGACAGGGACGGATTCATCAGCCTGTCGGAGTTCGAAA
CGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAG
GCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGA
GTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGAT
GTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAAT
TTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGC
GCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATAT
CAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGT
CTACTACTTTTAATGGTAATAAACTCTGATGCATTTTCAATGGTTTAAAA
ATTGGCTTACGATATTGAAAAAAAAAAAAAAAAAAAAAA
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