FC875422

Overview
NameFC875422
Unique NameFC875422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: YRPG_BACSU (Uncharacterized oxidoreductase yrpG OS=Bacillus subtilis GN=yrpG PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17
Identity = 67/199 (33.67%), Postives = 99/199 (49.75%), Query Frame = 2
Query:   56 EEDGISIIKHAFNKGITFFDTADKYGPYTN----EILLGK--ALKMLPRENIQVATKF--GFAELGLDAVIVKGNPEY-VRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA------VHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKPL 607
            E+    I+  A + GI FFDTA+ YG   N    E ++GK  A     RE + +ATK     ++       ++G   Y +R   E SLKRL  ++I+LY  H +D   P +E     +  V  GK+ YIG S  +   + +A A         +   Q ++SL  R  E E++P  R+LG+G+V +SPL  G  GGK L
Sbjct:   29 EKTAFRIMDEALDNGIQFFDTANIYGWGKNAGLTESIIGKWFAQGGQRREKVVLATKVYEPISDPNDGPNDMRGLSLYKIRRHLEGSLKRLQTDHIELYQMHHIDRRTPWDEIWEAFETQVRSGKVDYIGSSNFAGWHLVKAQAEAEKRRFMGLVTEQHKYSLLERTAEMEVLPAARDLGLGVVAWSPLAGGLLGGKAL 227          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: STCV_EMENI (Putative sterigmatocystin biosynthesis dehydrogenase stcV OS=Emericella nidulans GN=stcV PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.706e-17
Identity = 62/209 (29.67%), Postives = 98/209 (46.89%), Query Frame = 2
Query:    5 LGFGCMSLSGGYN---SPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFGFAELGLDAVIVKGN-----PEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP------DTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRG 586
            L  G M   G +      V++E   +++   +  G  F DTA+ Y    +E  LG+ +     R+ + +ATK+  +        +K N      + +R   EASL +L  +YIDL Y H  D S  +EE +  +  LV  GK+  IG+S+A        +   R H +      Q  W+   RD E EI+P+C+  G+ + P+  LGRG
Sbjct:   30 LCLGTMHFGGQWTRAMGDVTKETAFALLDRFYEAGGNFIDTANFYQGEGSEKWLGEWVASRGNRDELVLATKYTMSYRLTGPEKIKSNFQGSHSKSLRLSVEASLAKLRTDYIDLLYVHMWDFSTSVEEVMQSLHHLVAAGKVLNIGISDAPAWVVAKCNEYARFHGLTRFCVYQGRWACSYRDFEREILPMCQSEGLALAPWGALGRG 238          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.706e-17
Identity = 62/209 (29.67%), Postives = 105/209 (50.24%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  LK     R ++ + TK  +   G  A   +G + +++     ASL+RL +EY+D+ + +R D + P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   86 LGLGTWVTFGGQ---ISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 288          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.485e-16
Identity = 61/209 (29.19%), Postives = 108/209 (51.67%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------HPITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +++E    ++  A++ GI  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    +ASL+RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   52 LGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK 254          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.485e-16
Identity = 61/209 (29.19%), Postives = 108/209 (51.67%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +++E    ++  A++ GI  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    +ASL+RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   52 LGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK 254          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.940e-16
Identity = 61/209 (29.19%), Postives = 108/209 (51.67%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +++E    ++  A++ GI  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    +ASL+RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   52 LGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK 254          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.940e-16
Identity = 61/209 (29.19%), Postives = 108/209 (51.67%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +++E    ++  A++ GI  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    +ASL+RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   52 LGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK 254          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: AAD_PHACH (Aryl-alcohol dehydrogenase [NADP+] OS=Phanerochaete chrysosporium PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 56/210 (26.67%), Postives = 102/210 (48.57%), Query Frame = 2
Query:   14 GCMSLSGGYN----SPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFG--------FAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH------AVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRG 586
            G MS+   ++      + +E    ++   +N G  F DTA+ Y   T+E  +G+ ++    R+ + VATK+         F E+      V  + + +      SL++L   YID++Y H  D +  IEE +  +  LV +GK+ Y+G+S+     + +A+         P    + EW++  RD+E +I+P+C   G+ I P++ L  G
Sbjct:   34 GAMSIGDKWHPYGMGTMDKEASFKLLDAFYNAGGNFIDTANVYQDETSEEFIGEWMEARGNRDQMVVATKYSLVYKRGASFEEIPQKTQYVGNSLKSMHISVHDSLRKLRTSYIDIFYVHFWDYTCTIEEVMNGLHNLVAQGKVLYLGVSDTPAWVVSKANNYARMAGKTPFVIYEGEWNITMRDMERDIIPMCIHEGMAIAPWNVLCAG 243          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 60/209 (28.71%), Postives = 108/209 (51.67%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +++E    ++  A++ GI  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   52 LGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK 254          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 60/209 (28.71%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   86 LGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 288          
The following BLAST results are available for this feature:
BLAST of FC875422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
YRPG_BACSU1.754e-1733.67Uncharacterized oxidoreductase yrpG OS=Bacillus su... [more]
STCV_EMENI8.706e-1729.67Putative sterigmatocystin biosynthesis dehydrogena... [more]
KCAB1_CHICK8.706e-1729.67Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB2_HUMAN1.485e-1629.19Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN1.485e-1629.19Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT1.940e-1629.19Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE1.940e-1629.19Voltage-gated potassium channel subunit beta-2 OS=... [more]
AAD_PHACH2.533e-1626.67Aryl-alcohol dehydrogenase [NADP+] OS=Phanerochaet... [more]
KCAB2_XENLA3.308e-1628.71Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT3.308e-1628.71Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31403G04EF CTVClemen1 Citrus clementina cDNA clone C31403G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875422 ID=FC875422; Name=FC875422; organism=Citrus clementina; type=EST; length=642bp
AAAGCTGGGATTTGGATGCATGAGCCTGAGTGGAGGTTACAATTCTCCAG
TCTCTGAAGAGGATGGCATCTCTATAATAAAGCATGCTTTCAATAAAGGA
ATCACTTTCTTTGATACTGCTGATAAATATGGACCATATACTAATGAAAT
TCTTCTTGGAAAGGCCTTGAAGATGTTGCCCAGAGAAAACATACAAGTAG
CCACAAAGTTTGGGTTTGCAGAATTGGGACTTGATGCTGTGATCGTGAAG
GGTAACCCTGAGTATGTGCGCTCATGTTGTGAAGCTAGCTTGAAGCGCCT
TGATGTGGAATACATTGATCTGTATTATCAACATAGAGTGGACACATCAG
TCCCCATAGAGGAAACTATTGGCGAAATGAAAAAGCTGGTGGAAGAGGGT
AAAATCAAGTACATAGGATTATCTGAGGCTAGCCCAGATACAATTAGGAG
AGCACATGCTGTTCATCCTATCACAGCTGTACAACTGGAATGGTCTCTTT
GGACTCGTGACATTGAGAACGAGATAGTACCACTTTGCAGGGAGCTTGGC
ATTGGAATAGTTCCATACAGTCCTCTTGGTCGTGGATTTTTCGGTGGCAA
GCCGTTGTGGAAGTGTGCCTCAGATAGCTTTTTGAATTTCTT
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