FC875422

Overview
NameFC875422
Unique NameFC875422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15338 contig Ccv1_Contig15338:125..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 60/209 (28.71%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:  104 LGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 306          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 60/209 (28.71%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   93 LGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 295          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 60/209 (28.71%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   86 LGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 288          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 60/209 (28.71%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:  104 LGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 306          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 60/209 (28.71%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    5 LGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   86 LGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 288          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: AAD4_YEAST (Probable aryl-alcohol dehydrogenase AAD4 OS=Saccharomyces cerevisiae GN=AAD4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 54/197 (27.41%), Postives = 97/197 (49.24%), Query Frame = 2
Query:   50 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFG-----FAELGLDAVIVKGNPEY-VRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA------HAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            +++E    ++   +  G    DTA+ Y    +EI +G+ +K    R+ I +ATKF      +   G  +    GN ++ +      SL++L  ++ID+ Y H  D    IEE +  +  LV++GK+ Y+G+S+     +  A      H   P +  Q +W++  RD E +I+P+ R  G+ + P+  +G G F  K
Sbjct:    4 MNKEQAFELLDAFYEAGGNCIDTANSYQNEESEIWIGEWMKSRKLRDQIVIATKFTGDYKKYEVGGGKSANYCGNHKHSLHVSVRDSLRKLQTDWIDILYVHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSIYQGKWNVLNRDFERDIIPMARHFGMALAPWDVMGGGRFQSK 200          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: AAD14_YEAST (Putative aryl-alcohol dehydrogenase AAD14 OS=Saccharomyces cerevisiae GN=AAD14 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 53/202 (26.24%), Postives = 96/202 (47.52%), Query Frame = 2
Query:   35 GYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKF--GFAEL----GLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA------HAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            G+   +++E    ++   +  G    DTA+ Y    +EI +G+ +     R+ I +ATKF   + +     G  A     +   +      SL++L  ++ID+ Y H  D    IEE +  +  LV++GK+ Y+G+S+     +  A      H   P +  Q +W++  RD E +I+P+ R  G+ + P+  +G G F  K
Sbjct:   45 GFMGSMNKEQAFELLDAFYEAGGNCIDTANSYQNEESEIWIGEWMASRKLRDQIVIATKFTGDYKKYEVGGGKSANYCGNHKRSLHVSVRDSLRKLQTDWIDILYIHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSVYQGKWNVLNRDFERDIIPMARHFGMALAPWDVMGGGRFQSK 246          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.144e-15
Identity = 58/198 (29.29%), Postives = 101/198 (51.01%), Query Frame = 2
Query:   38 YNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            + S +S+E   +++  A+  G+  FDTA+ Y     E  LGK LK     R +  V TK  +   G  A   +G + +++      SL+RL ++Y+D+ + +R+D + P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   94 FGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYW---GGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIVRAMTFVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVETQLPELYHKIGVGSMTWSPLACGLITGK 288          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: ARK74_HUMAN (Aflatoxin B1 aldehyde reductase member 4 OS=Homo sapiens GN=AKR7L PE=2 SV=5)

HSP 1 Score: 79.7221 bits (195), Expect = 1.390e-14
Identity = 64/204 (31.37%), Postives = 96/204 (47.06%), Query Frame = 2
Query:   14 GCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGK-ALKMLPRE-NIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 601
            G M +    ++P S     ++ +    +G T  DTA  Y    +E +LG   L+M   +  +++ATK     +G         P+ VRS  E SLKRL    +DL+Y H  D S P+EET+    +L +EGK   +GLS       A   T+ +++     T  Q  +S  TR +E E+ P  R  G+    Y+PL  G   GK
Sbjct:   15 GAMEMGRRMDAPTSA----AVTRAFLERGHTEIDTAFLYSDGQSETILGGLGLRMGSSDCRVKIATKAN-PWIGNSL-----KPDSVRSQLETSLKRLQCPUVDLFYLHAPDHSAPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNGWILPTVYQGMYSATTRQVETELFPCLRHFGLRFYAYNPLAGGLLTGK 208          
BLAST of FC875422 vs. ExPASy Swiss-Prot
Match: YCSN_BACSU (Uncharacterized oxidoreductase ycsN OS=Bacillus subtilis GN=ycsN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.010e-14
Identity = 58/188 (30.85%), Postives = 89/188 (47.34%), Query Frame = 2
Query:   53 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKGN-----PEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEI---VPLCRELGIGIVPYSPLGRG 586
            S+ + +S+I+   + GIT FD AD YG YT E L G AL + P  RENI++ TK G      +    + +       ++ +  E SL  L  +YID+   HR D  +  E      + L   GK++Y G+S       R   +  P   V  +  L   ++EN +   + LC+E  I  + +SPL  G
Sbjct:   28 SDAELLSLIEWCIDHGITTFDHADIYGGYTCEKLFGNALALSPGLRENIELVTKCGIVLESPERPAHRSHHYNTSKSHILASVEQSLMNLRTDYIDMLLIHRPDPLMDPEGVAEAFQALKCSGKVRYFGVSNFKDHQYRMLESYLPEKLVTNQIELSAYELENMLDGTLNLCQEKRIPPMAWSPLAGG 215          
The following BLAST results are available for this feature:
BLAST of FC875422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
KCAB1_RABIT3.308e-1628.71Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU3.308e-1628.71Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE3.308e-1628.71Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN3.308e-1628.71Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN3.308e-1628.71Voltage-gated potassium channel subunit beta-1 OS=... [more]
AAD4_YEAST9.626e-1627.41Probable aryl-alcohol dehydrogenase AAD4 OS=Saccha... [more]
AAD14_YEAST1.642e-1526.24Putative aryl-alcohol dehydrogenase AAD14 OS=Sacch... [more]
KCAB3_XENLA2.144e-1529.29Voltage-gated potassium channel subunit beta-3 OS=... [more]
ARK74_HUMAN1.390e-1431.37Aflatoxin B1 aldehyde reductase member 4 OS=Homo s... [more]
YCSN_BACSU9.010e-1430.85Uncharacterized oxidoreductase ycsN OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC31403G04EF CTVClemen1 Citrus clementina cDNA clone C31403G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875422 ID=FC875422; Name=FC875422; organism=Citrus clementina; type=EST; length=642bp
AAAGCTGGGATTTGGATGCATGAGCCTGAGTGGAGGTTACAATTCTCCAG
TCTCTGAAGAGGATGGCATCTCTATAATAAAGCATGCTTTCAATAAAGGA
ATCACTTTCTTTGATACTGCTGATAAATATGGACCATATACTAATGAAAT
TCTTCTTGGAAAGGCCTTGAAGATGTTGCCCAGAGAAAACATACAAGTAG
CCACAAAGTTTGGGTTTGCAGAATTGGGACTTGATGCTGTGATCGTGAAG
GGTAACCCTGAGTATGTGCGCTCATGTTGTGAAGCTAGCTTGAAGCGCCT
TGATGTGGAATACATTGATCTGTATTATCAACATAGAGTGGACACATCAG
TCCCCATAGAGGAAACTATTGGCGAAATGAAAAAGCTGGTGGAAGAGGGT
AAAATCAAGTACATAGGATTATCTGAGGCTAGCCCAGATACAATTAGGAG
AGCACATGCTGTTCATCCTATCACAGCTGTACAACTGGAATGGTCTCTTT
GGACTCGTGACATTGAGAACGAGATAGTACCACTTTGCAGGGAGCTTGGC
ATTGGAATAGTTCCATACAGTCCTCTTGGTCGTGGATTTTTCGGTGGCAA
GCCGTTGTGGAAGTGTGCCTCAGATAGCTTTTTGAATTTCTT
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