FC875424

Overview
NameFC875424
Unique NameFC875424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875424_ssr674 microsatellite FC875424_ssr674:674..683. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8454 contig Ccv1_Contig8454:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_BOVIN (60S ribosomal protein L15 OS=Bos taurus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66
Identity = 128/201 (63.68%), Postives = 142/201 (70.65%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW-KRNQLSL 682
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W +RN L L
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNTLQL 200          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15B_YEAST (60S ribosomal protein L15-B OS=Saccharomyces cerevisiae GN=RPL15B PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66
Identity = 127/200 (63.50%), Postives = 140/200 (70.00%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR-NQLSL 682
            MGAYKY+ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                       YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR N LSL
Sbjct:    1 MGAYKYLEELERKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICNPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNTLSL 199          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15A_YEAST (60S ribosomal protein L15-A OS=Saccharomyces cerevisiae GN=RPL15A PE=1 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66
Identity = 127/200 (63.50%), Postives = 140/200 (70.00%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR-NQLSL 682
            MGAYKY+ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                       YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR N LSL
Sbjct:    1 MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNTLSL 199          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.112e-66
Identity = 129/200 (64.50%), Postives = 142/200 (71.00%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR-NQLSL 682
            MGA KY+ EL +KKQSDV+RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ                       YGKPTNQGV QLK+QRS +S AEER GR+   L+VLNSYWIN+DSTYKYFEVILVD  H AIR DPRINWI  PVHKHRE RGLTS GK+ RGL  KGH ++K R  RR TWKR N LSL
Sbjct:    1 MGALKYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRARVRRGGRKKPVPKGATYGKPTNQGVNQLKYQRSLKSTAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQHKAIRRDPRINWIVNPVHKHRESRGLTSTGKRSRGL-NKGHRYNKTRAGRRKTWKRHNTLSL 199          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_CTEID (60S ribosomal protein L15 OS=Ctenopharyngodon idella GN=rpl15 PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 3.462e-65
Identity = 129/201 (64.18%), Postives = 141/201 (70.15%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWK-RNQLSL 682
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WK RN L L
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQL 200          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_MYLPI (60S ribosomal protein L15 OS=Mylopharyngodon piceus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 247.669 bits (631), Expect = 4.522e-65
Identity = 126/195 (64.62%), Postives = 138/195 (70.77%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 667
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_CYPCA (60S ribosomal protein L15 OS=Cyprinus carpio GN=rpl15 PE=2 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.007e-64
Identity = 127/201 (63.18%), Postives = 141/201 (70.15%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWK-RNQLSL 682
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VL+SYW+ EDSTYK+FEV+L+D  H AIR DP   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WK RN L L
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVVLIDTFHKAIRRDPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQL 200          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_ICTPU (60S ribosomal protein L15 OS=Ictalurus punctatus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.316e-64
Identity = 128/201 (63.68%), Postives = 141/201 (70.15%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW-KRNQLSL 682
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W +RN L L
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAPWRRRNTLQL 200          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_HYPNO (60S ribosomal protein L15 OS=Hypophthalmichthys nobilis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.316e-64
Identity = 128/201 (63.68%), Postives = 141/201 (70.15%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWK-RNQLSL 682
            MGAYKY+ ELWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WK RN L L
Sbjct:    1 MGAYKYMQELWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQL 200          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_HYDAT (60S ribosomal protein L15 OS=Hydra attenuata GN=RPL15 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.931e-64
Identity = 127/201 (63.18%), Postives = 141/201 (70.15%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWK-RNQLSL 682
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGL+VL+SYW+ EDSTYK+FEV+LVD  H AIR +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WK RN L L
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVVLVDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQL 200          
The following BLAST results are available for this feature:
BLAST of FC875424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_BOVIN5.342e-6663.6860S ribosomal protein L15 OS=Bos taurus GN=RPL15 P... [more]
RL15B_YEAST5.342e-6663.5060S ribosomal protein L15-B OS=Saccharomyces cerev... [more]
RL15A_YEAST5.342e-6663.5060S ribosomal protein L15-A OS=Saccharomyces cerev... [more]
RL15_NEUCR9.112e-6664.5060S ribosomal protein L15 OS=Neurospora crassa GN=... [more]
RL15_CTEID3.462e-6564.1860S ribosomal protein L15 OS=Ctenopharyngodon idel... [more]
RL15_MYLPI4.522e-6564.6260S ribosomal protein L15 OS=Mylopharyngodon piceu... [more]
RL15_CYPCA1.007e-6463.1860S ribosomal protein L15 OS=Cyprinus carpio GN=rp... [more]
RL15_ICTPU1.316e-6463.6860S ribosomal protein L15 OS=Ictalurus punctatus G... [more]
RL15_HYPNO1.316e-6463.6860S ribosomal protein L15 OS=Hypophthalmichthys no... [more]
RL15_HYDAT2.931e-6463.1860S ribosomal protein L15 OS=Hydra attenuata GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC31403G06EF CTVClemen1 Citrus clementina cDNA clone C31403G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875424 ID=FC875424; Name=FC875424; organism=Citrus clementina; type=EST; length=697bp
GGTTCATATCATATATCTCCTGCAGTCGCGGCTTCTCAGCCAAAACTCTT
ATCATCACAGCACAGGTGAGCTCGACGATCGAACAATGGGTGCATACAAG
TACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTT
GCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCG
TCACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCC
AAGCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAA
GAGACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTG
TCACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGT
GCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAA
TGAGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCC
ACAATGCTATCCGCAATGACCCCAGGATCAACTGGATCTGTAAGCCTGTC
CACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAG
AGGTCTCCGAGGAAAGGGTCACTTGCACCACAAGGCACGACCTTCAAGAA
GGGCAACCTGGAAGAGGAACCAACTCTCTCTCTCAGGCGTTACCGTT
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