FC875424

Overview
NameFC875424
Unique NameFC875424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_CHICK (60S ribosomal protein L15 (Fragment) OS=Gallus gallus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 98/161 (60.87%), Postives = 108/161 (67.08%), Query Frame = 2
Query:  206 RPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW-KRNQLSL 682
            RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H  IR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W +RN L L
Sbjct:    2 RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKRIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNTLQL 161          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_PIG (60S ribosomal protein L15 (Fragment) OS=Sus scrofa GN=RPL15 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40
Identity = 87/150 (58.00%), Postives = 97/150 (64.67%), Query Frame = 2
Query:  239 GYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW-KRNQLSL 682
            GYKAKQ                       YGKP + GV QLKF RS +SV EERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W +RN L L
Sbjct:    1 GYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVXEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNTLQL 149          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METJA (50S ribosomal protein L15e OS=Methanocaldococcus jannaschii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40
Identity = 86/196 (43.88%), Postives = 116/196 (59.18%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 673
            MG YKY+ E W++ +   +R L   R  ++R+ P++VR+ RPTR D+AR LGYK KQ                         KP   GV ++   +S + +AEERA RK   ++VLNSYW+ ED  +K++EVILVD  H AI+ DP++NW+C   H+ R  RGLTSAGKK RGLR KG    K RPS RA  +R +
Sbjct:    1 MGIYKYIREAWKRPKESYVRQLLWERLQQWRREPAVVRIERPTRLDRARALGYKPKQGIIVVRVRVRRGGLRKPRPKNSK--KPATLGVNKITMGKSIQRIAEERAARKYPNMEVLNSYWVGEDGKHKWYEVILVDPYHPAIKADPQLNWLCTGKHRGRAFRGLTSAGKKGRGLRNKGIGAEKVRPSIRAHGRRGK 194          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METM7 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 84/194 (43.30%), Postives = 113/194 (58.25%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 667
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L+VLNSYW+ +D   K++EVILVD+ H +I++D   NW+CK  HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGTEKVRPSVRANSKK 192          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 84/194 (43.30%), Postives = 113/194 (58.25%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 667
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++RV RPTR D+AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L+VLNSYW+ +D   K++EVILVD+ H +I++D   NW+CK  HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGAEKVRPSVRANSKK 192          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 83/196 (42.35%), Postives = 112/196 (57.14%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 673
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA +K   ++VLNSYW+ +D   K++EVILVD    +I+ND   NW+CK  HK R  RGLTSAGKK RGL  KG    KARPS RA  K+ +
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVIRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATMGINKITMAKSIQRIAEERAAKKYPNMEVLNSYWVGQDGKQKWYEVILVDPCQPSIKNDKSYNWLCKGTHKGRVTRGLTSAGKKGRGLMYKGKGAEKARPSVRANGKKTK 194          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_THEON (50S ribosomal protein L15e OS=Thermococcus onnurineus (strain NA1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37
Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 655
            MG YKY+ E W+  +   +  L + R  ++R+ P +VRV RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAG+K RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKKRMIKWRREPVVVRVERPTRLDRARSLGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGRKSRGLRNKGKGAEKVRPSVRA 188          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_THEGJ (50S ribosomal protein L15e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37
Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 655
            MG YKY+ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIKWRREPVVVRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWITGKAHKGRVFRGLTSAGKKGRGLRNKGKGAEKVRPSVRA 188          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_PYRHO (50S ribosomal protein L15e OS=Pyrococcus horikoshii GN=rpl15e PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37
Identity = 85/190 (44.74%), Postives = 111/190 (58.42%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 655
            MG YKY+ E W+  +   +  L + R  ++R+ PS+VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYIIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKIRPSIRA 188          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAB (50S ribosomal protein L15e OS=Pyrococcus abyssi GN=rpl15e PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.339e-37
Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 655
            MG YKY+ E W+  +   +  L + R  ++R+ P++VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPAVVRIERPTRLDRARALGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKIRPSIRA 188          
The following BLAST results are available for this feature:
BLAST of FC875424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_CHICK1.237e-4660.8760S ribosomal protein L15 (Fragment) OS=Gallus gal... [more]
RL15_PIG6.575e-4058.0060S ribosomal protein L15 (Fragment) OS=Sus scrofa... [more]
RL15E_METJA6.575e-4043.8850S ribosomal protein L15e OS=Methanocaldococcus j... [more]
RL15E_METM72.115e-3843.3050S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM62.115e-3843.3050S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM52.115e-3842.3550S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_THEON1.050e-3744.2150S ribosomal protein L15e OS=Thermococcus onnurin... [more]
RL15E_THEGJ1.050e-3744.2150S ribosomal protein L15e OS=Thermococcus gammato... [more]
RL15E_PYRHO1.050e-3744.7450S ribosomal protein L15e OS=Pyrococcus horikoshi... [more]
RL15E_PYRAB2.339e-3744.2150S ribosomal protein L15e OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionC31403G06EF CTVClemen1 Citrus clementina cDNA clone C31403G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875424 ID=FC875424; Name=FC875424; organism=Citrus clementina; type=EST; length=697bp
GGTTCATATCATATATCTCCTGCAGTCGCGGCTTCTCAGCCAAAACTCTT
ATCATCACAGCACAGGTGAGCTCGACGATCGAACAATGGGTGCATACAAG
TACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTT
GCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCG
TCACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCC
AAGCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAA
GAGACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTG
TCACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGT
GCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAA
TGAGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCC
ACAATGCTATCCGCAATGACCCCAGGATCAACTGGATCTGTAAGCCTGTC
CACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAG
AGGTCTCCGAGGAAAGGGTCACTTGCACCACAAGGCACGACCTTCAAGAA
GGGCAACCTGGAAGAGGAACCAACTCTCTCTCTCAGGCGTTACCGTT
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