FC875424

Overview
NameFC875424
Unique NameFC875424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875424_ssr674 microsatellite FC875424_ssr674:674..683. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8454 contig Ccv1_Contig8454:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37
Identity = 93/200 (46.50%), Postives = 112/200 (56.00%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR-NQLSL 682
            MGAYKYV+E+ R+KQSDV+RFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ                       +GKP NQG+ QLKFQRS RS AEER  R+ GGL++LNSYWI +  +    +  L   +       P       P      L      GK+ RGL G+G  H K+     A WKR N+L L
Sbjct:    1 MGAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGNRKRPAPKGATFGKPVNQGINQLKFQRSLRSTAEERVARRCGGLRILNSYWITKTVSTSTLKSSLSTPSTRLSVVMPVSTGSATPYTSAENLAVSHPLGKQNRGL-GRGSKHTKS--PNHAFWKRTNKLFL 197          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_PYRFU (50S ribosomal protein L15e OS=Pyrococcus furiosus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.989e-37
Identity = 84/190 (44.21%), Postives = 110/190 (57.89%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 655
            MG YKY+ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                         KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKVRPSIRA 188          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_PYRKO (50S ribosomal protein L15e OS=Pyrococcus kodakaraensis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 81/190 (42.63%), Postives = 109/190 (57.37%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 655
            MG YKY+ E W+  +   +  L + R  ++R+ P + R+ RPTR D+AR LGY+AKQ                         KP+  G+ +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  I++DP+I WI    HK R  RGLTSAGK+ RGL  KG    K RPS RA
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIQWRRDPVVKRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGKRSRGLLNKGKGAEKVRPSIRA 188          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_STAMF (50S ribosomal protein L15e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36
Identity = 83/195 (42.56%), Postives = 110/195 (56.41%), Query Frame = 2
Query:   89 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 673
            G Y Y+++LW++     M  L R R  ++R+ P+I+R+ +PTR D+AR LGYKAKQ                         +P   G+      +S R +AEERA RK   L+VLNSY++ ED  YK++EVILVD  H AI NDP I WIC+  H+ R  RGLTSAGKK RGLR    L +    + +  WKR Q
Sbjct:    4 GMYHYIAQLWKRPYEGDMLTLMRQRLIKWRREPAIIRIEKPTRLDRARALGYKAKQGFIIVRVRVRKGGLRKQRPNK--GRRPKRMGIYGFAPSKSLRLIAEERAARKYPNLEVLNSYYVGEDGNYKWYEVILVDPHHPAICNDPDIKWICEKQHRRRVFRGLTSAGKKMRGLRKSRGLKY----TIKYKWKRKQ 192          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METMP (50S ribosomal protein L15e OS=Methanococcus maripaludis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.876e-35
Identity = 78/196 (39.80%), Postives = 110/196 (56.12%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 673
            M  Y YV E W+   +  ++ LQ  R  ++R+ PS++R+ RPTR D+AR LGYKAKQ                         KP   G+ ++   +S + +AEERA ++   ++VLNSYW+ +D   K++E+ILVD  H +I+ND   +W+    HK R  RGLTSAGKK RGL  KG    KARP  RA  K+ +
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVLRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATLGINKITMAKSIQRIAEERAAKRYPNMEVLNSYWVGQDGKQKWYEIILVDPCHPSIKNDKSYSWLSTGNHKGRANRGLTSAGKKGRGLMYKGKGAEKARPGVRANGKKTK 194          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METKA (50S ribosomal protein L15e OS=Methanopyrus kandleri GN=rpl15e PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 81/193 (41.97%), Postives = 109/193 (56.48%), Query Frame = 2
Query:   95 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 673
            YKY  E W++ +   +  L + R  ++R+ PS+ R+ RPTR ++ARRLGY+AK                          +P   G  +    +SK+ +AEERA RK   L+VLNSYW+ ED  YKY+EVI+VD  H  I++D RINWIC+   K R  RG T AGKK RGLR +G    K RPS RA  +R +
Sbjct:    7 YKYQREAWKRPKDSYVGELLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKPGYVVVRVRVPKGGRRKSRPKK--GRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSYWVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGRVFRGKTGAGKKARGLRKRGKGAEKVRPSLRAHRRRGK 197          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_DESK1 (50S ribosomal protein L15e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.420e-34
Identity = 86/201 (42.79%), Postives = 114/201 (56.72%), Query Frame = 2
Query:   95 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKY------RGLRGKGHLHHKARPSRRATWKRNQLS 679
            Y Y++E W++K  + +  L R R  E+R+ PS+VR+ +PTR DKAR LGYKAK                          +P   GV      +S R +AEERA RK  GL+VLNSY++ ED  YK++EVILVD  H +I NDP +NWIC+P ++ R  RGLTSAGKK       RGLRG  +   K +   R   KR++ S
Sbjct:    6 YHYIAEAWKEKSRE-LEALIRQRLIEWRREPSVVRLEKPTRLDKARALGYKAKVGFIIVRVRVRKGGQRKPRPDS--GRRPKRMGVYGYAPAKSLRLIAEERAARKFPGLEVLNSYYVAEDGRYKWYEVILVDPHHPSICNDPDVNWICEPQNRGRVFRGLTSAGKKMRGLRKSRGLRGTVYYKWKRKLKERELKKRHEAS 203          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_AERPE (50S ribosomal protein L15e OS=Aeropyrum pernix GN=rpl15e PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 84/204 (41.18%), Postives = 108/204 (52.94%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLR------GKGHLHHKARPSRRATWKRNQLS 679
            +  Y Y++  W+K    +   L + R  E+R+ PSI+RV +PTR D+AR LGYKAKQ                         +P   GV      +S R +AEERA RK   L VLNSY++ ED  YK++EVILVD  H AI+NDP +NW+    HK R  RGLTSAGKK RGLR      G      K +   R   KR++ S
Sbjct:    3 LSMYHYIAREWKKPYEGLHGELMKARLLEWRRQPSILRVEKPTRLDRARALGYKAKQGVIVARVRVRKGGRRKPRPNK--GRRPKRMGVYGFAPAKSLRLIAEERAQRKYPNLVVLNSYYVGEDGRYKWYEVILVDPNHPAIKNDPELNWVTTGKHKGRPFRGLTSAGKKMRGLRKSRGLKGTHKYKWKKKAKERILRKRHEAS 204          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METTH (50S ribosomal protein L15e OS=Methanobacterium thermoautotrophicum GN=rpl15e PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 76/182 (41.76%), Postives = 102/182 (56.04%), Query Frame = 2
Query:   95 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKAR 640
            Y+YV + W+  +   +R L   R  ++R+ P I R+ RPTR D+AR LGY+AK                          +PT  GV ++   +S + +AEER  RK   ++VLNSYW+ ED  YK++EVILVD  H AI+NDP+I WIC   H+ R  RGL S GKK RGLR +G    K R
Sbjct:    3 YRYVKDAWKNPKDSYVRELMWERAPKWRRDPVIKRIERPTRIDRARALGYRAKPGYIVVRTRVRRGSQRKTRFK--AGRRPTRMGVKKITTAKSIKRIAEERVARKYPNMEVLNSYWVWEDGKYKFYEVILVDPNHLAIKNDPKIYWICVKQHRGRVFRGLISEGKKNRGLRNRGKGAEKVR 182          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METST (50S ribosomal protein L15e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 78/183 (42.62%), Postives = 103/183 (56.28%), Query Frame = 2
Query:   95 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKAR 640
            YKY+ E W+      ++ L R R  ++R+ P I+R+ +PTR D+ARRLGYKAK                         G+ P   GV ++  ++S + +AEER  RK   L+VLNSYW+ ED   KY+EVILVD    +I++D +INWIC   H  R  RGLTSAGKK RGL  KG    K R
Sbjct:    7 YKYMKEAWKNPDESYVKELMRERLPKWRRQPVIIRIDKPTRIDRARRLGYKAKTGYVVARIRVRRGSRRKSRFKN---GRDPKRMGVNKISGEKSIQRMAEERVARKYPNLEVLNSYWVWEDGKAKYYEVILVDPQCPSIQHDNKINWICSKKHTRRAFRGLTSAGKKGRGLNKKGKGAEKVR 186          
The following BLAST results are available for this feature:
BLAST of FC875424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_QUESU3.054e-3746.5060S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15E_PYRFU3.989e-3744.2150S ribosomal protein L15e OS=Pyrococcus furiosus ... [more]
RL15E_PYRKO4.411e-3642.6350S ribosomal protein L15e OS=Pyrococcus kodakarae... [more]
RL15E_STAMF9.826e-3642.5650S ribosomal protein L15e OS=Staphylothermus mari... [more]
RL15E_METMP4.876e-3539.8050S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METKA1.086e-3441.9750S ribosomal protein L15e OS=Methanopyrus kandler... [more]
RL15E_DESK12.420e-3442.7950S ribosomal protein L15e OS=Desulfurococcus kamc... [more]
RL15E_AERPE2.049e-3341.1850S ribosomal protein L15e OS=Aeropyrum pernix GN=... [more]
RL15E_METTH2.676e-3341.7650S ribosomal protein L15e OS=Methanobacterium the... [more]
RL15E_METST7.785e-3342.6250S ribosomal protein L15e OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionC31403G06EF CTVClemen1 Citrus clementina cDNA clone C31403G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875424 ID=FC875424; Name=FC875424; organism=Citrus clementina; type=EST; length=697bp
GGTTCATATCATATATCTCCTGCAGTCGCGGCTTCTCAGCCAAAACTCTT
ATCATCACAGCACAGGTGAGCTCGACGATCGAACAATGGGTGCATACAAG
TACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTT
GCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCG
TCACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCC
AAGCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAA
GAGACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTG
TCACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGT
GCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAA
TGAGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCC
ACAATGCTATCCGCAATGACCCCAGGATCAACTGGATCTGTAAGCCTGTC
CACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAG
AGGTCTCCGAGGAAAGGGTCACTTGCACCACAAGGCACGACCTTCAAGAA
GGGCAACCTGGAAGAGGAACCAACTCTCTCTCTCAGGCGTTACCGTT
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