FC875424

Overview
NameFC875424
Unique NameFC875424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875424_ssr674 microsatellite FC875424_ssr674:674..683. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8454 contig Ccv1_Contig8454:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_HALMA (50S ribosomal protein L15e OS=Haloarcula marismortui GN=rpl15e PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 75/188 (39.89%), Postives = 99/188 (52.66%), Query Frame = 2
Query:   92 AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 655
            AY Y+ + W+      +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                         K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+
Sbjct:    5 AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRS 190          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_THEVO (50S ribosomal protein L15e OS=Thermoplasma volcanium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 76/188 (40.43%), Postives = 105/188 (55.85%), Query Frame = 2
Query:   95 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 655
            Y+ + E W+  +   +  +++ R   +R  PS+VR+  PTR D+AR LGYK+K                      I+ G+ P      +L  ++S + +AEERA  K   L+VLNSY++ ED  YKY+EVILVD +H  I NDP I+WI +P +  R  RGLTSAG K RGLR       K+RPS RA
Sbjct:    7 YQEIREEWKSLKKSEIYDVEKSRMIGWRHGPSVVRLDHPTRIDRARALGYKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRLAYNKLTRKKSLKLIAEERAADKYPNLEVLNSYYVGEDGLYKYYEVILVDKSHPNIYNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRA 191          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_SULTO (50S ribosomal protein L15e OS=Sulfolobus tokodaii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 75/201 (37.31%), Postives = 107/201 (53.23%), Query Frame = 2
Query:   83 TMGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHKARPSRRATWKRNQ 673
            T   Y Y+ + W   QSD  + + R R  E+R+ P++ R+ +PTR ++AR +GYKAKQ                         +P   GV      +  R +AEE+A RK   L+VL SY++ ED  YKY+E+I+VD  H  I++DP + W+  P ++ R  RGLTSAGKK RGL   RG KG + HK        WK+ +
Sbjct:    2 TSSMYNYIEQTW---QSDEWKKVLRQRLIEWRKSPAVERIDKPTRLNRARAIGYKAKQGFVVVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYSPAKGYRWIAEEKAARKFPNLEVLGSYYVGEDGMYKYYEIIMVDPNHPVIKSDPNLKWLQDPANRKRVFRGLTSAGKKARGLLKSRGLKGTVKHK--------WKKKE 189          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METMA (50S ribosomal protein L15e OS=Methanosarcina mazei GN=rpl15e PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 75/194 (38.66%), Postives = 102/194 (52.58%), Query Frame = 2
Query:   95 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 673
            Y YV + W+      +  L+  R   +R+  S+ R+ RPTR D+AR LGYKAKQ                        G+ T + G  ++    S + +AE RA RK   L+VLNSYW+ ED  +K+FEVILVD  H  I++D  +NWIC    + R  RG TSAG+K RG+  +G    K RPS RA   R +
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEARADRKYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWICDASIRGRATRGKTSAGRKGRGMSTRGKGTEKTRPSIRAHKSRGK 196          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_SULSO (50S ribosomal protein L15e OS=Sulfolobus solfataricus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 73/196 (37.24%), Postives = 103/196 (52.55%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 673
            +  Y Y+   W  ++       QR+  W  R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L+VL SY++ ED  YKY+E+++VD +H  I++DP+  W+  P +++R  RGLTSAGKK RGLR    L    + + R  W R Q
Sbjct:    3 LSMYHYIENTWNSEEWKKSVLRQRLIKW--RKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYSPAKGYRWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIVMVDPSHPVIKSDPKHKWLQDPSNRNRVFRGLTSAGKKVRGLRKSRGL----KGTVRYKWNRKQ 190          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METB6 (50S ribosomal protein L15e OS=Methanoregula boonei (strain 6A8) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 74/189 (39.15%), Postives = 102/189 (53.97%), Query Frame = 2
Query:   95 YKYVSELW-RKKQSDVMRFL-QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 655
            Y YV E W R  +SDV   L  R++ W  R+  S+ R+ RPTR D+AR LGYKAKQ                     +   +    G       +S + +AEERA  +   ++VLNSYW+ +D   KY+EVILVD  H +I++D  + W+  P H+ R  RG TSAG+K RG+R +G    K RPS R+
Sbjct:    6 YAYVREAWARPDKSDVKALLWDRMQVW--RREGSVTRIDRPTRIDRARALGYKAKQGIAVVRVHVRRGGRRASRY--VRARRSARMGKNSSTPGKSIQRIAEERASVRYPNMEVLNSYWVGQDGKLKYYEVILVDGHHPSIQSDKNLAWLANPTHRGRAERGKTSAGRKGRGMRTRGRGTEKTRPSIRS 190          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_PICTO (50S ribosomal protein L15e OS=Picrophilus torridus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27
Identity = 77/193 (39.90%), Postives = 111/193 (57.51%), Query Frame = 2
Query:   86 MGAYKYVSELWRK-KQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHL-HHKARPSRRA 655
            + +Y  + + W+K K+SD+   +Q+ R   +R+  S+VR+  PTR D+AR LGYKAKQ                     I+ G+ P      +L  ++S + +AEERA  K   ++VLNSY++ ED  YKY+EVIL+D +  A+ +D  ++WI    +K R  RGLTSAG K RGL G G L   K+RPS RA
Sbjct:    2 LSSYSMIRDSWKKLKKSDIYP-VQKARMVSWRKSGSVVRLDYPTRLDRARSLGYKAKQGFIIVRSRVRKGGQHRPK---IMGGRRPRRLAYNKLTVKKSIQLIAEERAADKYPNMEVLNSYYVGEDGLYKYYEVILIDRSSPAVLSDKNVSWIANSANKGRVYRGLTSAGYKSRGL-GHGRLGSAKSRPSIRA 189          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METS5 (50S ribosomal protein L15e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 75/202 (37.13%), Postives = 110/202 (54.46%), Query Frame = 2
Query:   92 AYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHK--ARPSRRATWKRNQLS 679
            AY +++  W  ++    + + R R  E+R   ++ R+ +PTR D+AR LGYKAKQ                         +P   GV      +S + +AEE+A RK  GL+VL SY++ ED  YKY+EVILVD  +  I +DP+ NW+  P ++ R  RGLTSAG++ RGL   RG KG +H+K   +   R   KR++ S
Sbjct:    5 AYSFMASTWASEEWK--KTVIRQRLVEWRNQNTVTRIEKPTRLDRARALGYKAKQGIIVARVKVEKGGMDKQRPNS--GRRPKRMGVYGFSPAKSLQFIAEEKAARKFPGLEVLGSYYVAEDGKYKYYEVILVDPHNPVIMSDPQFNWLKNPANRGRVFRGLTSAGRRTRGLLKSRGLKGTIHYKIARKKKEREQKKRHEAS 202          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_METLZ (50S ribosomal protein L15e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 66/185 (35.68%), Postives = 99/185 (53.51%), Query Frame = 2
Query:   95 YKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 646
            Y YV + W+K     ++ L   R   +R+  ++VR+ RPTR D+AR LGYKAKQ                      + G+ TN+ G+ +    ++ +S+AEERA  +   ++VLNSYW+ +D   KY+EVILVD    ++  D  + W+     + R  RG TSAG++ RGL  +G    K RPS
Sbjct:    6 YGYVRDAWKKPAESGVKKLLWERMQTWRRQGAVVRLERPTRIDRARELGYKAKQGIIVVRASIRRGGRRKSRY---IRGRRTNRMGMRKATPGKNLQSIAEERAATRYPNMEVLNSYWVGQDGKSKYYEVILVDRNSPSVLADKNLAWVADT--RGRVFRGKTSAGRRARGLHNRGTGTEKCRPS 185          
BLAST of FC875424 vs. ExPASy Swiss-Prot
Match: RL15E_NANEQ (50S ribosomal protein L15e OS=Nanoarchaeum equitans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 70/193 (36.27%), Postives = 97/193 (50.26%), Query Frame = 2
Query:   86 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 664
            MG Y+YV  L+ K   + +  L + R  ++R+ P IV V RPTR D+AR LGYK                        I  G+             + + +AEERA R    ++VL SYW+ ED  YK++EVILVD  +  I N P   W+ +   + R  RG TS+ +K+RGLR  G    K RPS+RA +K
Sbjct:    1 MGLYQYVRALY-KDPKEFLGELYKQRIQQWRREPPIVEVERPTRIDRARALGYKP---LPGIKIVRVRVRKGTRKREEIKGGRRPKAEYRIRPLGVNLQWIAEERANRLHRNMEVLGSYWVGEDGLYKWYEVILVDPFNPNIYNRPEYVWLLQKNQRGRVFRGKTSSARKFRGLRNGGLGAEKVRPSKRANFK 189          
The following BLAST results are available for this feature:
BLAST of FC875424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_HALMA3.061e-2939.8950S ribosomal protein L15e OS=Haloarcula marismort... [more]
RL15E_THEVO5.222e-2940.4350S ribosomal protein L15e OS=Thermoplasma volcani... [more]
RL15E_SULTO6.820e-2937.3150S ribosomal protein L15e OS=Sulfolobus tokodaii ... [more]
RL15E_METMA1.163e-2838.6650S ribosomal protein L15e OS=Methanosarcina mazei... [more]
RL15E_SULSO1.519e-2837.2450S ribosomal protein L15e OS=Sulfolobus solfatari... [more]
RL15E_METB62.592e-2839.1550S ribosomal protein L15e OS=Methanoregula boonei... [more]
RL15E_PICTO2.865e-2739.9050S ribosomal protein L15e OS=Picrophilus torridus... [more]
RL15E_METS53.742e-2737.1350S ribosomal protein L15e OS=Metallosphaera sedul... [more]
RL15E_METLZ5.058e-2435.6850S ribosomal protein L15e OS=Methanocorpusculum l... [more]
RL15E_NANEQ1.922e-2336.2750S ribosomal protein L15e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC31403G06EF CTVClemen1 Citrus clementina cDNA clone C31403G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875424 ID=FC875424; Name=FC875424; organism=Citrus clementina; type=EST; length=697bp
GGTTCATATCATATATCTCCTGCAGTCGCGGCTTCTCAGCCAAAACTCTT
ATCATCACAGCACAGGTGAGCTCGACGATCGAACAATGGGTGCATACAAG
TACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTT
GCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCG
TCACCCGTCCCACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCC
AAGCAGGGTTATGTCGTTTATCGTGTGCGTGTAAGACGTGGAGGACGAAA
GAGACCAGTTCCCAAGGGTATTGTATATGGTAAACCGACAAACCAGGGTG
TCACTCAGCTTAAATTCCAGCGCAGCAAGCGTTCAGTTGCTGAGGAACGT
GCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCAACTCATACTGGATCAA
TGAGGATTCAACTTACAAGTACTTTGAGGTAATCCTGGTGGATGCTGCCC
ACAATGCTATCCGCAATGACCCCAGGATCAACTGGATCTGTAAGCCTGTC
CACAAGCACAGGGAGCTTCGTGGACTCACTTCTGCTGGGAAGAAGTACAG
AGGTCTCCGAGGAAAGGGTCACTTGCACCACAAGGCACGACCTTCAAGAA
GGGCAACCTGGAAGAGGAACCAACTCTCTCTCTCAGGCGTTACCGTT
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