FC875428

Overview
NameFC875428
Unique NameFC875428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875428 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 30/90 (33.33%), Postives = 49/90 (54.44%), Query Frame = 2 
Query:  143 CGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCSRV 409
            CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+  A   I GIK  + A +P +CG+      I+   DCS++
Sbjct:   35 CGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124
The following BLAST results are available for this feature:
BLAST of FC875428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLT22_PARJU7.555e-1133.33Probable non-specific lipid-transfer protein 2 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403G10EF CTVClemen1 Citrus clementina cDNA clone C31403G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875428 ID=FC875428; Name=FC875428; organism=Citrus clementina; type=EST; length=463bp
GAATCAAGCTTGTAACAGAACCTGATAACTAGCTATAACCAAGCAAAAGC
CTCCCTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTT
TTGTGCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGCA
GGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGC
GTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCC
GCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGC
TTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTA
GTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGC
TCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGA
TTGACTGAGAAGA
back to top