FC875429

Overview
NameFC875429
Unique NameFC875429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig890 contig Ccv1_Contig890:6..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   83 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   92 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            E + FVGGL++ T +  L   FS YG I E  ++ DRET RSRGFGFVTF + +  +DA+ GMNG+ +DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   83 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   83 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.262e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   92 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            E + F+GGL + T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+ +DGR I V++A
Sbjct:    4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   92 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            E + F+GGL + T +  L +AF+ YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15
Identity = 34/77 (44.16%), Postives = 56/77 (72.73%), Query Frame = 2
Query:   98 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            R +VG L+W   D +L   FS  G ++E+++I DR++GRS+GFGFVT+   + +++AI+ ++G +LDGR I V+EA+
Sbjct:  205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   92 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   DA+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 2
Query:   50 VPISSFLLMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            VP+SS +L +   +  + ++GGL+  T + SL +AFS++  + E++++ ++ TGRSRG+GFV F  E S   AI  MNGQ L+G NI+VN A+
Sbjct:   17 VPVSS-MLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   98 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            R +VG L+W   D +L   F+  G ++E+++I DR++GRS+GFGFVT    + ++ AI  +NG +LDGR I V+EA+
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
The following BLAST results are available for this feature:
BLAST of FC875429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CIRBP_RAT1.016e-1549.38Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_RANCA1.016e-1551.28Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_MOUSE1.016e-1549.38Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR1.016e-1549.38Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA2.262e-1550.00Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBA_XENLA5.040e-1548.72Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC1_ARATH6.583e-1544.16Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBM3_MOUSE8.597e-1548.72Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
RT19_ARATH1.466e-1443.0140S ribosomal protein S19, mitochondrial OS=Arabid... [more]
ROC2_ARATH1.466e-1444.1629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC31403G11EF CTVClemen1 Citrus clementina cDNA clone C31403G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875429 ID=FC875429; Name=FC875429; organism=Citrus clementina; type=EST; length=663bp
GATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAG
TCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGG
TGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGA
GGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACGATC
GCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGATGAG
AAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGG
CCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTG
GCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGA
CGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGG
AGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTG
ACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCT
TCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAG
TTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGT
CGTTTTGATCGGT
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