FC875429

Overview
NameFC875429
Unique NameFC875429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig890 contig Ccv1_Contig890:6..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   92 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   D +  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   80 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   80 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 328
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   92 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +    A+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.118e-13
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.118e-13
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +D    MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVT       +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            M  AD   + F+GGL   T + SL   F  YG I E  ++ DRET +SRGF F+TF      + A+  MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   74 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF    + + A   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84          
The following BLAST results are available for this feature:
BLAST of FC875429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RBM3_RAT2.501e-1447.44Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
ROC1_NICSY7.278e-1442.1729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL7.278e-1442.1730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM3_HUMAN9.505e-1447.44Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
HNRPG_PANTR2.118e-1344.05Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN2.118e-1344.05Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
HNRPG_RAT6.161e-1342.86Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
HNRPG_MOUSE1.373e-1242.86Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
HNRPG_BOVIN1.793e-1242.86Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
HNRGT_MACFA3.993e-1242.86RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403G11EF CTVClemen1 Citrus clementina cDNA clone C31403G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875429 ID=FC875429; Name=FC875429; organism=Citrus clementina; type=EST; length=663bp
GATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAG
TCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGG
TGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGA
GGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACGATC
GCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGATGAG
AAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGG
CCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTG
GCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGA
CGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGG
AGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTG
ACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCT
TCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAG
TTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGT
CGTTTTGATCGGT
back to top