FC875429

Overview
NameFC875429
Unique NameFC875429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig890 contig Ccv1_Contig890:6..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 2
Query:   98 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 2
Query:   98 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            + FVGGL + TTDSSL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 2
Query:   98 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            + F+GGL W TTD SL + F  +G++L+  ++ D  TGRSRGFGF+TF++ K + + +      +LDG+ I    A
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKIIDPKRA 237          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 2
Query:   98 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            + FVGGL + TTD+SL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 2
Query:   86 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNG-QNLDGRNI 310
            D   + FVGGL+W TT  +L   F  +GDI++  ++ + E+GRSRGFGFVTF D  ++   ++  NG   LDGR I
Sbjct:    4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTI 77          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 2
Query:   77 ASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 310
            A AD   + FVGGL W+TT  +L   FS YG++++  I+ D+ T +SRGFGFV F+D   +   +       LDGRNI
Sbjct:    4 AGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLASRPHTLDGRNI 80          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:   98 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 325
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+T +SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 2
Query:   98 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 310
            + F+GGL+W T+  SL + F  YGDI E+ ++ D  T RSRGFGFVTF D  S+ D +       LDG+ +
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV-DKVLTQGTHELDGKKV 99          
BLAST of FC875429 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 2
Query:   77 ASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 310
            + AD   + FVGGL W+TT  +L   FS YG++++  I+ D+ T +SRGFGFV F+D   +   +       LDGRNI
Sbjct:    4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLASRPHTLDGRNI 80          
The following BLAST results are available for this feature:
BLAST of FC875429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RBM38_MOUSE1.982e-1147.37RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
RBM24_DANRE1.982e-1147.37RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
YHKF_SCHPO3.381e-1140.79Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
RBM24_HUMAN3.381e-1146.05RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]
RB27C_DROME4.415e-1144.74Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
DAZP1_MOUSE4.415e-1143.59DAZ-associated protein 1 OS=Mus musculus GN=Dazap1... [more]
RBM38_XENLA7.531e-1146.05RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 ... [more]
MSIR6_DROME7.531e-1145.07RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
DAZP1_HUMAN9.836e-1142.31DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]

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Properties
Property NameValue
Genbank descriptionC31403G11EF CTVClemen1 Citrus clementina cDNA clone C31403G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875429 ID=FC875429; Name=FC875429; organism=Citrus clementina; type=EST; length=663bp
GATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAG
TCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGG
TGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGA
GGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACGATC
GCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGATGAG
AAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGG
CCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTG
GCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGA
CGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGG
AGGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTG
ACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCT
TCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAG
TTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGT
CGTTTTGATCGGT
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