FC875433

Overview
NameFC875433
Unique NameFC875433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9695 contig Ccv1_Contig9695:48..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM2_ENCHE (Methionine aminopeptidase 2 OS=Encephalitozoon hellem GN=MAP2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.379e-39
Identity = 86/200 (43.00%), Postives = 127/200 (63.50%), Query Frame = 3
Query:    6 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLAT---INKNFSTLAFCRRYLD--RLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEVISRGDDY 590
            T TGI+  GID R+CDIG  I EV+ SYE+E++GK + ++ + +L+GHSI +++IH G S+P V   + T++    F+A+ETFA+TG+G++ +   CSH+M N    H   +L   K L+     +  +F TL F  R+LD   L E   L ++  L   G+  PYPPL DI GS V+QFEHT+ L  + KE+++RGDDY
Sbjct:  163 TETGIRSLGIDARVCDIGRDINEVISSYEMEVDGKKWAIRPVSDLHGHSISQFKIHGGISIPAVNNRDPTRITGDTFYAVETFATTGEGFINDRSPCSHFMIN---THKSRKLYN-KDLIKVYEFVRDSFGTLPFSPRHLDYYNLVEGSALKSVNLLTMMGLFTPYPPLNDIDGSKVAQFEHTVYLSESGKEILTRGDDY 358          
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM2_ENCCU (Methionine aminopeptidase 2 OS=Encephalitozoon cuniculi GN=MAP2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.842e-39
Identity = 85/197 (43.15%), Postives = 122/197 (61.93%), Query Frame = 3
Query:    6 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETK--YLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEVISRGDDY 590
            T TGIK  G+DVR+CDIG  I EV+ SYEVEI G+++ ++ I +L+GHSI +++IH G S+P V   + T+++   F+A+ETFA+TGKG + +   CSH++ N             K +   +  +  TL F  R+LD  G  K   L ++  L   G++ PYPPL DI G  V+QFEHT+ L    KEV++RGDDY
Sbjct:  163 TETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAVNNRDTTRIKGDSFYAVETFATTGKGSIDDRPPCSHFVLNTYKSRKLFNKDLIK-VYEFVKDSLGTLPFSPRHLDYYGLVKGGSLKSVNLLTMMGLLTPYPPLNDIDGCKVAQFEHTVYLSEHGKEVLTRGDDY 358          
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: YD43_CAEEL (Putative uncharacterized protein T27A8.3 OS=Caenorhabditis elegans GN=T27A8.3 PE=5 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37
Identity = 77/123 (62.60%), Postives = 96/123 (78.05%), Query Frame = 3
Query:   96 EINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVG--HIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKN 458
            E +G   +VK I +LNG SI + +IH GK+VPIVKGGEQ +MEE E +AIETF STGKGY  +D+E SHYMKNF++    IPLRL ++K LL  I+KNF+TLAFCR ++DRL ETKYLMALK+
Sbjct:   29 EFHGNSNEVKPIGSLNGQSIAQCRIHTGKTVPIVKGGEQARMEENEIYAIETFGSTGKGYFHDDMETSHYMKNFELADEKIPLRLQKSKGLLKLIDKNFATLAFCRCWIDRLEETKYLMALKD 151          
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM_PYRKO (Methionine aminopeptidase OS=Pyrococcus kodakaraensis GN=map PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 66/166 (39.76%), Postives = 98/166 (59.04%), Query Frame = 3
Query:   57 GAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVP-IVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYL-DRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILL 548
            G  I++V  + E  I GK F    I NL+GH + RY++HAG SVP + +  +   ++EG+ FAIE FA+TG G V E      +M   D    P+R+ +A++LL  I KN+ TL F  R+L D L E +  +AL  L   G +  YP L +++G  V+QFEHT+++
Sbjct:  126 GVMIRDVARAIEETIRGKGFN--PIVNLSGHKVERYKLHAGVSVPNVYREADTYVLQEGDVFAIEPFATTGAGQVIEVPPALIFMYLRDR---PVRMLQARRLLMHIKKNYKTLPFAYRWLQDFLPEGQLKLALAQLEKAGAIYAYPILREVRGGMVAQFEHTVIV 286          
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM_PYRHO (Methionine aminopeptidase OS=Pyrococcus horikoshii GN=map PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.211e-21
Identity = 65/166 (39.16%), Postives = 100/166 (60.24%), Query Frame = 3
Query:   57 GAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVP-IVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLD-RLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILL 548
            G  ++E+ ++ E EI  + F    I NL+GH I RY++HAG S+P I +  +   ++EG+ FAIE FA+TG G V E      YM   D    P+R+ +A+ LLA I + + TL F  R+L   + E +  +AL++L  +G +  YP L +I+G  V+QFEHTI++
Sbjct:  125 GVEVKELGKAIENEIRKRGFN--PIVNLSGHKIERYKLHAGVSIPNIYRPHDNYVLQEGDVFAIEPFATTGAGQVIEVPPTLIYMYVRDA---PVRMAQARFLLAKIKREYKTLPFAYRWLQGEMPEGQLKLALRSLERSGALYGYPVLREIRGGMVTQFEHTIIV 285          
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM_PYRFU (Methionine aminopeptidase OS=Pyrococcus furiosus GN=map PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 67/166 (40.36%), Postives = 98/166 (59.04%), Query Frame = 3
Query:   57 GAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVP-IVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDR-LGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILL 548
            G  I+E+ ++ E EI  + F  K I NL+GH I RY++HAG S+P I +  +   ++EG+ FAIE FA+ G G V E      YM   DV   P+R+ +A+ LLA I + + TL F  R+L   + E +  +ALK L   G +  YP L +I+   V+QFEHTI++
Sbjct:  125 GVEIKELGKAIENEIRKRGF--KPIVNLSGHKIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDV---PVRVAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIVAQFEHTIIV 285          
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM_PYRAB (Methionine aminopeptidase OS=Pyrococcus abyssi GN=map PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 66/166 (39.76%), Postives = 97/166 (58.43%), Query Frame = 3
Query:   57 GAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVP-IVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLD-RLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILL 548
            G  I+E+  + E EI  + F    I NL+GH I RY++HAG S+P I +  +  K+ EG+ FAIE FA+TG G V E      YM   D    P+R+ +A+ LLA I + + TL F  R+L   + E +  +AL+ L  +G +  YP L +I+   V+QFEHTI++
Sbjct:  125 GVEIKELGRAIEDEIRKRGFN--PIVNLSGHKIERYKLHAGISIPNIYRPHDNYKLREGDVFAIEPFATTGAGQVIEVPPTLIYMYVRDA---PVRMVQARFLLAKIKREYKTLPFAYRWLQGEMPEGQLKLALRTLEKSGALYGYPVLREIRNGLVTQFEHTIIV 285          
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM_METJA (Methionine aminopeptidase OS=Methanocaldococcus jannaschii GN=map PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 63/189 (33.33%), Postives = 98/189 (51.85%), Query Frame = 3
Query:   12 TGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEVISR 578
            T IKE    + + ++G  IQEV+ESY           K I NL+GH + RY++H G S+P V       ++ G+  AIE FA+ G G V++    + Y     +   P+RLP+A++LL  I+KN+  L F  R++  L      +AL +L     +  YP L + +   V Q EHTIL+     E+ ++
Sbjct:  120 TVIKEINPPMNIGEMGKIIQEVIESYGY---------KPISNLSGHVMHRYELHTGISIPNVYERTNQYIDVGDLVAIEPFATDGFGMVKDGNLGNIYK---FLAKRPIRLPQARKLLDVISKNYPYLPFAERWV--LKNESERLALNSLIRASCIYGYPILKERENGIVGQAEHTILITENGVEITTK 294          
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM_METTH (Methionine aminopeptidase OS=Methanobacterium thermoautotrophicum GN=map PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 55/175 (31.43%), Postives = 97/175 (55.43%), Query Frame = 3
Query:   27 AGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMA-LKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILL 548
            AG++V   +IG  I+E + S+ +           + NL GHS+ R+ +H+G S+P +      ++EEG+  AIE FA+ G G V +  +   Y+  F +   PLRL  A+++L  I + +  L F +R+L+   + K L A ++ L  +  + PY  L +  G+ V+Q+EHT+++
Sbjct:  129 AGVEVG--EIGRVIEETIHSHGMN---------PVSNLTGHSMERWILHSGLSIPNINERNTHQLEEGDVLAIEPFATDGVGLVTDMPQT--YIFRF-LRERPLRLVHARRVLGKIREEYHALPFAQRWLEEYFDAKRLNASMRMLIQSRAIYPYHVLREKSGAMVAQWEHTVIV 289          
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM_ARCFU (Methionine aminopeptidase OS=Archaeoglobus fulgidus GN=map PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 55/177 (31.07%), Postives = 91/177 (51.41%), Query Frame = 3
Query:   18 IKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILL 548
            +  AG+ V   +IG AI++ + +Y           K I NL GH +  Y  HA  S+      +   +EEG   AIE FA+ G G V E  EC  Y     +   P+R+  A+++L  + +N+ TL F +R+L +  +    + +  L   G+++ YP L ++ G  VSQ+EHT+++
Sbjct:  123 VVRAGVSVS--EIGKAIEDAITNYGF---------KPIVNLTGHGLLPYLNHAPPSIYNYATEKGVTLEEGMVVAIEPFATNGVGKVGERGECEIYSL---LNPRPVRMKMAREILKEVEENYKTLPFAKRWLKKAPD----IIISKLAREGVLRAYPVLTEVSGGLVSQWEHTLIV 281          
The following BLAST results are available for this feature:
BLAST of FC875433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
AMPM2_ENCHE1.379e-3943.00Methionine aminopeptidase 2 OS=Encephalitozoon hel... [more]
AMPM2_ENCCU6.842e-3943.15Methionine aminopeptidase 2 OS=Encephalitozoon cun... [more]
YD43_CAEEL4.904e-3762.60Putative uncharacterized protein T27A8.3 OS=Caenor... [more]
AMPM_PYRKO2.612e-2239.76Methionine aminopeptidase OS=Pyrococcus kodakaraen... [more]
AMPM_PYRHO2.211e-2139.16Methionine aminopeptidase OS=Pyrococcus horikoshii... [more]
AMPM_PYRFU2.888e-2140.36Methionine aminopeptidase OS=Pyrococcus furiosus G... [more]
AMPM_PYRAB4.926e-2139.76Methionine aminopeptidase OS=Pyrococcus abyssi GN=... [more]
AMPM_METJA2.989e-1833.33Methionine aminopeptidase OS=Methanocaldococcus ja... [more]
AMPM_METTH3.653e-1631.43Methionine aminopeptidase OS=Methanobacterium ther... [more]
AMPM_ARCFU3.653e-1631.07Methionine aminopeptidase OS=Archaeoglobus fulgidu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403H03EF CTVClemen1 Citrus clementina cDNA clone C31403H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875433 ID=FC875433; Name=FC875433; organism=Citrus clementina; type=EST; length=679bp
GAAGCACCAATACGGGTATCAAGGAAGCAGGGATCGATGTCCGACTTTGT
GATATTGGTGCCGCAATCCAAGAAGTCATGGAGTCATACGAGGTTGAAAT
AAATGGAAAGGTGTTTCAAGTTAAAAGTATCCGGAACTTGAATGGACACA
GCATTGGGCGTTATCAGATCCATGCTGGAAAGTCTGTTCCAATTGTGAAA
GGAGGGGAGCAGACAAAGATGGAAGAGGGTGAATTTTTCGCAATTGAAAC
CTTTGCGTCAACAGGGAAAGGATATGTCAGAGAAGATCTTGAGTGCAGCC
ATTACATGAAAAATTTTGATGTTGGCCACATCCCACTGAGGCTTCCCAGA
GCCAAGCAACTATTAGCAACAATCAACAAGAATTTCTCTACATTGGCATT
CTGTAGACGGTATTTAGATCGCCTTGGAGAGACTAAATATCTGATGGCCC
TGAAGAATTTGTGTGATACTGGCATTGTTCAGCCATATCCTCCTCTCTGC
GACATTAAAGGCAGTTATGTGTCTCAGTTCGAGCATACCATCTTACTACG
GCCGACCTGCAAAGAGGTGATATCCAGAGGAGATGACTACTGAAGTGGAT
GATGTTAAAATTTTGTCAGNTACTTATCTGCACGATTGCTGTACACCTTT
TACCGTTTGGACTGTAAATTTTCTGTTGA
back to top