FC875433

Overview
NameFC875433
Unique NameFC875433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9695 contig Ccv1_Contig9695:48..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875433 vs. ExPASy Swiss-Prot
Match: AMPM_SULSO (Methionine aminopeptidase OS=Sulfolobus solfataricus GN=map PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 56/168 (33.33%), Postives = 85/168 (50.60%), Query Frame = 3 
Query:   57 GAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHY-MKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGET--KYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLR 551
            G +I E+    E  I  + +  K IRNL GH I RY++HAG  +P V       ++    +AIE FA+ G G V E    + Y +KN ++  +     R  +L+  I   F+ L F  R+L        +    +KNL   G ++ YP L +IK   VSQFEHT++++
Sbjct:  128 GLSIGEIGRVIEKVIRAQGY--KPIRNLGGHLIRRYELHAGVFIPNVYERGLGVIQSDSVYAIEPFATDGGGEVVEGKSITIYSLKNPNIKGLS---SRENELIDFIYTRFNYLPFSERWLKEFSTNVDELRNNIKNLVKKGALRGYPILIEIKKGVVSQFEHTVIVK 290
The following BLAST results are available for this feature:
BLAST of FC875433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
AMPM_SULSO7.618e-1433.33Methionine aminopeptidase OS=Sulfolobus solfataric... [more]

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Properties
Property NameValue
Genbank descriptionC31403H03EF CTVClemen1 Citrus clementina cDNA clone C31403H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875433 ID=FC875433; Name=FC875433; organism=Citrus clementina; type=EST; length=679bp
GAAGCACCAATACGGGTATCAAGGAAGCAGGGATCGATGTCCGACTTTGT
GATATTGGTGCCGCAATCCAAGAAGTCATGGAGTCATACGAGGTTGAAAT
AAATGGAAAGGTGTTTCAAGTTAAAAGTATCCGGAACTTGAATGGACACA
GCATTGGGCGTTATCAGATCCATGCTGGAAAGTCTGTTCCAATTGTGAAA
GGAGGGGAGCAGACAAAGATGGAAGAGGGTGAATTTTTCGCAATTGAAAC
CTTTGCGTCAACAGGGAAAGGATATGTCAGAGAAGATCTTGAGTGCAGCC
ATTACATGAAAAATTTTGATGTTGGCCACATCCCACTGAGGCTTCCCAGA
GCCAAGCAACTATTAGCAACAATCAACAAGAATTTCTCTACATTGGCATT
CTGTAGACGGTATTTAGATCGCCTTGGAGAGACTAAATATCTGATGGCCC
TGAAGAATTTGTGTGATACTGGCATTGTTCAGCCATATCCTCCTCTCTGC
GACATTAAAGGCAGTTATGTGTCTCAGTTCGAGCATACCATCTTACTACG
GCCGACCTGCAAAGAGGTGATATCCAGAGGAGATGACTACTGAAGTGGAT
GATGTTAAAATTTTGTCAGNTACTTATCTGCACGATTGCTGTACACCTTT
TACCGTTTGGACTGTAAATTTTCTGTTGA
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