FC875434

Overview
NameFC875434
Unique NameFC875434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_MOUSE (Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.060e-41
Identity = 92/194 (47.42%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  136 YATTHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR   SL                                 +       F + LDDV+IT L+F +E+T A+E
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLI-----------------------------RRELTERAKDFSLILDDVAITELSFSREYTAAVE 198          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_HUMAN (Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.060e-41
Identity = 92/194 (47.42%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  136 YATTHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR   SL                                 +       F + LDDV+IT L+F +E+T A+E
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLI-----------------------------RRELTERAKDFSLILDDVAITELSFSREYTAAVE 198          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB_HUMAN (Prohibitin OS=Homo sapiens GN=PHB PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.796e-40
Identity = 90/188 (47.87%), Postives = 119/188 (63.30%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP I+ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE+ S                                S+D     + F + LDDVS+T LTFGKEFT A+E
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQV-----------------------------SDDLTERAATFGLILDDVSLTHLTFGKEFTEAVE 184          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB_BOVIN (Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.796e-40
Identity = 90/188 (47.87%), Postives = 119/188 (63.30%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP I+ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE+ S                                S+D     + F + LDDVS+T LTFGKEFT A+E
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQV-----------------------------SDDLTERAATFGLILDDVSLTHLTFGKEFTEAVE 184          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_BOVIN (Prohibitin-2 OS=Bos taurus GN=PHB2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.345e-40
Identity = 92/194 (47.42%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  136 YATTHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR   SL                                 +       F + LDDV+IT L+F +E+T A+E
Sbjct:   34 YGIRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLI-----------------------------RRELTERAKDFSLILDDVAITELSFSREYTAAVE 198          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB_CHICK (Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.063e-40
Identity = 89/188 (47.34%), Postives = 118/188 (62.77%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  +   TGS DLQ V I LR+L RPV  QLP I+ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE+ S                                SED     + F + LDDVS+T LTFGKEFT A+E
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDTVVGEGTHFLIPWVQKPIIFDCRSRPRNIPVITGSKDLQNVNITLRILFRPVTAQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQV-----------------------------SEDLTERAATFGLILDDVSLTHLTFGKEFTEAVE 184          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB2_CHICK (Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.911e-40
Identity = 92/194 (47.42%), Postives = 117/194 (60.31%), Query Frame = 1
Query:  136 YATTHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            Y    S++ VEGG RAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVLTRP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR   SL                                 +       F + LDDV+IT L+F +E+T A+E
Sbjct:   34 YGVRESVFIVEGGQRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLTRPNAAELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLI-----------------------------RRELTERAKDFSLILDDVAITELSFSREYTAAVE 198          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB1_SCHPO (Prohibitin-1 OS=Schizosaccharomyces pombe GN=phb1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.681e-38
Identity = 87/188 (46.28%), Postives = 118/188 (62.77%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            S+Y+V GG RA++F+R+ GV+ +V  EGTH +IPW ++ ++YDVR RP  + +TTGS DLQMV + LRVL RP    LP IY+ LG +Y+ERVLPSI +E LK+VVAQ++A++LITQREV S                                 ++     + F I L+DVSIT +TFGKEFT A+E
Sbjct:   25 SIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKDLQMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVSAKI-----------------------------RQELVQRATEFGIRLEDVSITHMTFGKEFTKAVE 183          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB1_CAEEL (Mitochondrial prohibitin complex protein 1 OS=Caenorhabditis elegans GN=phb-1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.867e-38
Identity = 85/188 (45.21%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            +LYNV+GG RA++F+R  GVK++V  EGTH +IPW ++P+I+D+R+ P  V + TGS DLQ V I LR+L RP  D+LP IY  +G +Y ERVLPSI +E LKAVVAQ++A ++ITQREV S             S+++ ++                    + F + LDD++IT L FG+EFT A+E
Sbjct:   29 ALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDLQNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREVVSQRA----------SVALRER-------------------AAQFGLLLDDIAITHLNFGREFTEAVE 187          
BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB1_YEAST (Prohibitin-1 OS=Saccharomyces cerevisiae GN=PHB1 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.858e-37
Identity = 83/189 (43.92%), Postives = 118/189 (62.43%), Query Frame = 1
Query:  148 HSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            +S+Y+V+GG R ++F+RI GVK +V  EGTH ++PW ++ +IYDVR +P  + + TG+ DLQMV + LRVL RP   QLP IY+ LG +Y+ERVLPSI +E LK++VAQ++A++LITQRE+ S                                 ++     + F I L+DVSIT +TFG EFT A+E
Sbjct:   27 YSMYDVKGGSRGVIFDRINGVKQQVVGEGTHFLVPWLQKAIIYDVRTKPKSIATNTGTKDLQMVSLTLRVLHRPEVLQLPAIYQNLGLDYDERVLPSIGNEVLKSIVAQFDAAELITQREIISQKI-----------------------------RKELSTRANEFGIKLEDVSITHMTFGPEFTKAVE 186          
The following BLAST results are available for this feature:
BLAST of FC875434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB2_MOUSE8.060e-4147.42Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1[more]
PHB2_HUMAN8.060e-4147.42Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2[more]
PHB_HUMAN1.796e-4047.87Prohibitin OS=Homo sapiens GN=PHB PE=1 SV=1[more]
PHB_BOVIN1.796e-4047.87Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1[more]
PHB2_BOVIN2.345e-4047.42Prohibitin-2 OS=Bos taurus GN=PHB2 PE=2 SV=1[more]
PHB_CHICK3.063e-4047.34Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1[more]
PHB2_CHICK8.911e-4047.42Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2 SV=1[more]
PHB1_SCHPO1.681e-3846.28Prohibitin-1 OS=Schizosaccharomyces pombe GN=phb1 ... [more]
PHB1_CAEEL2.867e-3845.21Mitochondrial prohibitin complex protein 1 OS=Caen... [more]
PHB1_YEAST1.858e-3743.92Prohibitin-1 OS=Saccharomyces cerevisiae GN=PHB1 P... [more]

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Properties
Property NameValue
Genbank descriptionC31403H06EF CTVClemen1 Citrus clementina cDNA clone C31403H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875434 ID=FC875434; Name=FC875434; organism=Citrus clementina; type=EST; length=715bp
GGACTTGGGTGTAGGGTTTTAGCAGAGCTGTTTCAGGAAAAAATGAACTT
CAACAATGTCAAAGTTCCCAAGATGCCGGGTGATGGCGCAGTCTCTGCTC
TAATTAAGGTGGGGGTTATTGGTGGGCTTGGTTTGTACGCTACTACTCAT
AGTCTCTACAATGTCGAGGGAGGGCATAGGGCCATTATGTTCAACCGCAT
AGTTGGTGTCAAAGATAAGGTTTATCCCGAGGGGACGCATCTTATGATTC
CATGGTTTGAGAGGCCTGTCATCTATGATGTTCGTGCACGACCCAACTTA
GTGGAGAGTACTACTGGTAGCCATGATCTTCAGATGGTTAAGATTGGGCT
TAGGGTGCTCACTCGTCCTGTGGCTGACCAGTTGCCTACAATTTATCGAA
CCCTTGGTGAGAACTACAATGAAAGGGTTCTGCCTTCTATCATTCATGAA
ACTTTAAAAGCTGTGGTTGCTCAGTACAATGCCAGCCAGCTTATCACACA
GCGTGAGGTCAGCAGCCTGGCCTGTTCTTTTTGACCTGGTTTCAGTTAGT
GTTAAAGTTTATCTATGATCGATCAATAAGCTTTTCATCTTTTAGACTGT
AAGTAGGGAAATTCGGAAGATTCTGACTGAGAGGGCAGCCTATTTCACAT
TGCTCTGGATGATGTCTCCATTACGAGCCTTACTTTTGGCAAGGAATTTA
CATTTGCCATTGAAG
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