FC875434

Overview
NameFC875434
Unique NameFC875434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC875434 vs. ExPASy Swiss-Prot
Match: PHB1_DICDI (Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 82/188 (43.62%), Postives = 117/188 (62.23%), Query Frame = 1 
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREVSSLACSF*PGFS*C*SLSMIDQ*AFHLLDCK*GNSEDSD*EGSLFHIALDDVSITSLTFGKEFTFAIE 714
            S+Y V+GG RA++F+RI GVK+K   EGTH ++PW ++P+I+D+R+ P  ++S TGS DLQ V + +RVL RP  + LP+I+  LG +Y+ER+LPS+ +E LK+VVAQY+A++LITQREV S                                 E        F++ LDDVSIT L+F ++FT AIE
Sbjct:   25 SMYTVDGGQRAVIFDRISGVKEKSVGEGTHFIMPWLQKPIIFDIRSSPRNIKSDTGSKDLQTVSVTVRVLFRPDVEHLPSIFSKLGLDYDERILPSLGNEVLKSVVAQYDATELITQREVVSKEI-----------------------------RESLMKRAKEFNLLLDDVSITHLSFSQDFTNAIE 183
The following BLAST results are available for this feature:
BLAST of FC875434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB1_DICDI1.573e-3643.62Prohibitin-1, mitochondrial OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionC31403H06EF CTVClemen1 Citrus clementina cDNA clone C31403H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875434 ID=FC875434; Name=FC875434; organism=Citrus clementina; type=EST; length=715bp
GGACTTGGGTGTAGGGTTTTAGCAGAGCTGTTTCAGGAAAAAATGAACTT
CAACAATGTCAAAGTTCCCAAGATGCCGGGTGATGGCGCAGTCTCTGCTC
TAATTAAGGTGGGGGTTATTGGTGGGCTTGGTTTGTACGCTACTACTCAT
AGTCTCTACAATGTCGAGGGAGGGCATAGGGCCATTATGTTCAACCGCAT
AGTTGGTGTCAAAGATAAGGTTTATCCCGAGGGGACGCATCTTATGATTC
CATGGTTTGAGAGGCCTGTCATCTATGATGTTCGTGCACGACCCAACTTA
GTGGAGAGTACTACTGGTAGCCATGATCTTCAGATGGTTAAGATTGGGCT
TAGGGTGCTCACTCGTCCTGTGGCTGACCAGTTGCCTACAATTTATCGAA
CCCTTGGTGAGAACTACAATGAAAGGGTTCTGCCTTCTATCATTCATGAA
ACTTTAAAAGCTGTGGTTGCTCAGTACAATGCCAGCCAGCTTATCACACA
GCGTGAGGTCAGCAGCCTGGCCTGTTCTTTTTGACCTGGTTTCAGTTAGT
GTTAAAGTTTATCTATGATCGATCAATAAGCTTTTCATCTTTTAGACTGT
AAGTAGGGAAATTCGGAAGATTCTGACTGAGAGGGCAGCCTATTTCACAT
TGCTCTGGATGATGTCTCCATTACGAGCCTTACTTTTGGCAAGGAATTTA
CATTTGCCATTGAAG
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