FC875435

Overview
NameFC875435
Unique NameFC875435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.142e-25
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  327 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKL+TRLTYTLD + G F+V  DG+ +  E DG+
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGI 155          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.546e-22
Identity = 57/129 (44.19%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  309 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKL+TRLTYTLD I     V  DG+    EKDG+
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGL 199          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  399 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGMTM--LL*QFTGWSDVCLPFT 743
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DG+    +  Q  G   + L FT
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFT 147          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  399 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGMTM--LL*QFTGWSDVCLPFT 743
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DG+    +  Q  G   + L FT
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFT 147          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.495e-14
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  408 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGL 129          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.796e-12
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  408 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDG+
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGI 130          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.977e-11
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  399 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ G+
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGI 130          
BLAST of FC875435 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.513e-11
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  384 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLITRLTYTLDEIEGPFEVSPDGTIKFVEKDGM 689
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK G+
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGI 129          
The following BLAST results are available for this feature:
BLAST of FC875435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PSBO_CHLRE9.142e-2545.90Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR5.546e-2244.19Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB5.939e-1639.50Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN5.939e-1639.50Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP2.495e-1441.84Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY36.796e-1239.58Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA51.977e-1139.39Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE77.513e-1135.58Photosystem II manganese-stabilizing polypeptide O... [more]

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Properties
Property NameValue
Genbank descriptionC31403H07EF CTVClemen1 Citrus clementina cDNA clone C31403H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875435 ID=FC875435; Name=FC875435; organism=Citrus clementina; type=EST; length=764bp
GCTTCCTCCACATACAAAACAAGTAATCCTCTGTAAAGAGTTTAGTTTGT
TTCTTAGAAGATAAAGGGATACTAGCAAGTAACCCACAAGTGGTAGGGAG
CAAGATGGCAGCCTCGTTACAAGCCGCAGCTACACTGATGCAACCCACCA
AGGTGGGTGTGGTACCCGCTCGCAGCAGCAGCCTGCAGCTGAGGTCTTCA
CAGAGCGTTTCGAAGGCTTTTGGTGTCGACTCAGCTGGTGCTAGGATCTC
TTGCTCTTTGAATAATGACTTGAAGGATTTGGCTCAGAAATGTGTTGATG
CTACCAAGATCGCTGGCTTTGCCCTCGCCACTTCTGCTCTCGTCGTTTCG
GGAGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTATGATGAAATCCA
GAGCAAGACATACATGGAAGTGAAGGGAACCGGAACTGCTAACCAGTGCC
CAACCATTGATGGCGGAGTTGACTCTTTTGCCTTCAAACCTGGCAAATAC
CAGGCTAAGAAGTTCTGCCTAGAACCAACTTCCTTCACTGTCAAGGCTGA
GGGTGTCAACAAGAATGCCCCACCAGATTTCCAGAACACCAAGCTCATAA
CCCGCCTTACCTACACCCTTGACGAGATTGAGGGACCTTTTGAAGTGTCC
CCCGATGGCACCATTAAGTTTGTGGAGAAGGATGGAATGACTATGCTGCT
GTGACAGTTCACTGGCTGGAGCGACGTGTGCCTTCCTTTCACATCAACAT
TGGTACATCAGCAA
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