FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_METLZ (Anthranilate phosphoribosyltransferase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 71/165 (43.03%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV--EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E I  + S  DL+  EA+ ++ D +   A +  I AFL  L  KGET  EI   A  M + A ++  +  G  VD  GTGGDG NT NIST A+  AA  G  V K             DVLEALG+ ID+ PE V   +DE GIGFM +  +HPAMK+   VRK
Sbjct:    4 ECIKKVASHSDLSVYEAKGAMQDIMSGNATDGQIGAFLTALVMKGETSSEIAAFASVMRENAVQITPKRNGMLVDTCGTGGDGKNTFNISTAAAFTAAGAGVTVVKHGNRGATSKCGSADVLEALGIKIDISPERVCEIIDENGIGFMFAQSHHPAMKYAGKVRK 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_GEOSL (Anthranilate phosphoribosyltransferase OS=Geobacter sulfurreducens GN=trpD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 72/173 (41.62%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV---EGLGDA------------VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++ R+DLTEAE    +D +++  A  A I+AF+  LR KGET  EI G AR M   AT +   +G+ D             +D+VGTGGDG NT NIST  S + A+CG KVAK             DVLE+LGV +D+ PE V + + + GIGF+ +   H AMK     RK
Sbjct:    9 VVERIDLTEAEMIEVMDQIMSGGATPAQIAAFITALRMKGETVEEITGAARVMRDRATPIRVGKGVLDIDRDDINIDQETILDVVGTGGDGTNTFNISTTVSFVVASCGVKVAKHGNRAVSSACGSADVLESLGVNLDVTPETVEQAIAKIGIGFLFAPALHGAMKHAIGPRK 181          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_DESPS (Anthranilate phosphoribosyltransferase OS=Desulfotalea psychrophila GN=trpD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE-GLGD---AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 674
            +++  DL+E+E  AS++ +++ +A  A I++F+  LR KGE   EIVG  R M   AT ++ GLG     +DIVGTGGDGA+T N+ST  S + AA G  VAK             DVLEALGV + LDP  V R V E GIGF+ +   H AMK
Sbjct:   19 VVTGADLSESEMMASMEEVMSGQASPAQIASFITALRMKGEAVEEIVGAVRVMRDKATFIDCGLGPDDILMDIVGTGGDGADTFNVSTTTSFVVAAAGVAVAKHGNRAVSSRCGSADVLEALGVDLSLDPATVARSVQEIGIGFLFAPLLHAAMK 173          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_XANOP (Anthranilate phosphoribosyltransferase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 72/173 (41.62%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  189 PLTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD---AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            P+TP   E +   I   ++   E    +  ++  E  + +++A L  LR K ET GEI G A  M +++ +V+ + D    VDIVGTGGDG++T NIST A  +AAA GAKVAK             D LEALG VI+L PE V   + + GIGFM +  +HP+MK V PVR+
Sbjct:    2 PITP--QEALQRTIEHREIFHDEMVGLMRQIMRGEVSDMMVAAILTGLRVKKETIGEIAGAATVMREFSRRVD-VSDHQHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVADALAQTGIGFMYAPLHHPSMKVVAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_XANOM (Anthranilate phosphoribosyltransferase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 72/173 (41.62%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  189 PLTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD---AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            P+TP   E +   I   ++   E    +  ++  E  + +++A L  LR K ET GEI G A  M +++ +V+ + D    VDIVGTGGDG++T NIST A  +AAA GAKVAK             D LEALG VI+L PE V   + + GIGFM +  +HP+MK V PVR+
Sbjct:    2 PITP--QEALQRTIEHREIFHDEMVGLMRQIMRGEVSDMMVAAILTGLRVKKETIGEIAGAATVMREFSRRVD-VSDHQHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVADALAQTGIGFMYAPLHHPSMKVVAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_DIAST (Anthranilate phosphoribosyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 70/172 (40.70%), Postives = 96/172 (55.81%), Query Frame = 3
Query:  189 PLTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            P+TP   E +   I   ++   E    +  +++ E    + +A    LR K ET GEI   A+ M +++ KV+       VDIVGTGGDGANT NIST A+ + AA GAKV+K             D +EALGV I+L P  + +C+ + GIGFM +  +HPAMK V PVRK
Sbjct:    3 PITP--QEALQRTIEHREIFHDEMLHLMRMIMSGELSPVMTAAITTGLRVKKETIGEITAAAQVMREFSHKVQVHDTKHLVDIVGTGGDGANTFNISTCATFVIAAAGAKVSKHGGRSVSSKSGSADAMEALGVHINLQPAQIAQCIGDVGIGFMFAPNHHPAMKNVAPVRK 172          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BURPS (Anthranilate phosphoribosyltransferase OS=Burkholderia pseudomallei GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A +  LR K ET GEI   A  M ++A +VE   +A  VDIVGTGGDG++T NIST    +AAA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAM+ + PVR+
Sbjct:   39 MAAAIITGLRVKKETIGEIAAAATVMREFARRVEVEDNANFVDIVGTGGDGSHTFNISTATMFVAAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMRNIAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BURP6 (Anthranilate phosphoribosyltransferase OS=Burkholderia pseudomallei (strain 668) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A +  LR K ET GEI   A  M ++A +VE   +A  VDIVGTGGDG++T NIST    +AAA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAM+ + PVR+
Sbjct:   39 MAAAIITGLRVKKETIGEIAAAATVMREFARRVEVEDNANFVDIVGTGGDGSHTFNISTATMFVAAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMRNIAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BURP1 (Anthranilate phosphoribosyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A +  LR K ET GEI   A  M ++A +VE   +A  VDIVGTGGDG++T NIST    +AAA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAM+ + PVR+
Sbjct:   39 MAAAIITGLRVKKETIGEIAAAATVMREFARRVEVEDNANFVDIVGTGGDGSHTFNISTATMFVAAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMRNIAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BURP0 (Anthranilate phosphoribosyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A +  LR K ET GEI   A  M ++A +VE   +A  VDIVGTGGDG++T NIST    +AAA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAM+ + PVR+
Sbjct:   39 MAAAIITGLRVKKETIGEIAAAATVMREFARRVEVEDNANFVDIVGTGGDGSHTFNISTATMFVAAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMRNIAPVRR 171          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_METLZ2.148e-2543.03Anthranilate phosphoribosyltransferase OS=Methanoc... [more]
TRPD_GEOSL2.148e-2541.62Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_DESPS2.148e-2545.16Anthranilate phosphoribosyltransferase OS=Desulfot... [more]
TRPD_XANOP2.805e-2541.62Anthranilate phosphoribosyltransferase OS=Xanthomo... [more]
TRPD_XANOM2.805e-2541.62Anthranilate phosphoribosyltransferase OS=Xanthomo... [more]
TRPD_DIAST2.805e-2540.70Anthranilate phosphoribosyltransferase OS=Diaphoro... [more]
TRPD_BURPS2.805e-2548.87Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_BURP62.805e-2548.87Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_BURP12.805e-2548.87Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_BURP02.805e-2548.87Anthranilate phosphoribosyltransferase OS=Burkhold... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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