FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BURMS (Anthranilate phosphoribosyltransferase OS=Burkholderia mallei (strain SAVP1) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A +  LR K ET GEI   A  M ++A +VE   +A  VDIVGTGGDG++T NIST    +AAA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAM+ + PVR+
Sbjct:   39 MAAAIITGLRVKKETIGEIAAAATVMREFARRVEVEDNANFVDIVGTGGDGSHTFNISTATMFVAAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMRNIAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BURMA (Anthranilate phosphoribosyltransferase OS=Burkholderia mallei GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A +  LR K ET GEI   A  M ++A +VE   +A  VDIVGTGGDG++T NIST    +AAA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAM+ + PVR+
Sbjct:   39 MAAAIITGLRVKKETIGEIAAAATVMREFARRVEVEDNANFVDIVGTGGDGSHTFNISTATMFVAAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMRNIAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BURM9 (Anthranilate phosphoribosyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A +  LR K ET GEI   A  M ++A +VE   +A  VDIVGTGGDG++T NIST    +AAA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAM+ + PVR+
Sbjct:   39 MAAAIITGLRVKKETIGEIAAAATVMREFARRVEVEDNANFVDIVGTGGDGSHTFNISTATMFVAAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMRNIAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BURM7 (Anthranilate phosphoribosyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A +  LR K ET GEI   A  M ++A +VE   +A  VDIVGTGGDG++T NIST    +AAA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAM+ + PVR+
Sbjct:   39 MAAAIITGLRVKKETIGEIAAAATVMREFARRVEVEDNANFVDIVGTGGDGSHTFNISTATMFVAAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMRNIAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_AGRT5 (Anthranilate phosphoribosyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/151 (43.05%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  243 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            L   +A+ + D L++ EA  + I  FL+ LR +GET  EIVG   +M      V    +A+DIVGTGGDG  T NIST ASI+ A  G  VAK             D L ALGV +D+ P+ + RC+ EAG+GFM +  +H AM+ V P R
Sbjct:   17 LNREDARTAFDILMSGEATPSQIGGFLMALRVRGETVDEIVGAVSSMRARMLPVSAPANAIDIVGTGGDGIGTYNISTLASIITAGTGLPVAKHGNRALSSKSGTADALSALGVRLDIGPDLIARCIAEAGLGFMFAQMHHSAMRHVGPSR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_ACISJ (Anthranilate phosphoribosyltransferase OS=Acidovorax sp. (strain JS42) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 70/172 (40.70%), Postives = 96/172 (55.81%), Query Frame = 3
Query:  189 PLTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            P+TP   E +   I   ++   E    +  +++ E    + +A    LR K ET GEI   A+ M +++ KV+       VDIVGTGGDGANT NIST A+ + AA GAKV+K             D +EALGV I+L P  + +C+ + GIGFM +  +HPAMK V PVRK
Sbjct:    3 PITP--QEALQRTIEHREIFHDEMLHLMRMIMSGELSPVMTAAITTGLRVKKETIGEITAAAQVMREFSHKVQVHDTKHLVDIVGTGGDGANTFNISTCATFVIAAAGAKVSKHGGRSVSSKSGSADAMEALGVHINLQPAQIAQCIGDVGIGFMFAPNHHPAMKNVAPVRK 172          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RHIME (Anthranilate phosphoribosyltransferase OS=Rhizobium meliloti GN=trpD PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 64/155 (41.29%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  231 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +R  L+  +A+A+ + +++  A  + I  FL+ LR +GET  EIVG   AM      VE    A+DIVGTGGDGA T NIST A+++ A  G  VAK             D L  LGV +D+ P  + RC+ EAG+GFM + ++H AM+ V P R
Sbjct:   13 AREALSREDARAAFEIIMSGAATPSQIGGFLMALRVRGETVDEIVGAVGAMRARMLPVEAPDGAIDIVGTGGDGAGTYNISTLAALIVAGAGVPVAKHGNRALSSKSGTADALSCLGVNLDIGPAVISRCIAEAGLGFMFAQQHHSAMRHVGPTR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEU5 (Anthranilate phosphoribosyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 67/164 (40.85%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E ++ ++ ++DLT  E QA +  ++  +  +A + AFL+ +R K ET  EIVG  + M + A  V    D  VD  GTGGDG N  N+ST AS + AA G KVAK             D+LEA GV +DL PE V R VD  G+GFM +  +H AMK+    R+
Sbjct:    5 EALNRIVGQLDLTTEEMQAVMRQIMTGQCTDAQVGAFLMGMRMKSETIDEIVGAVQVMRELAAPVRFDTDKLVDTCGTGGDGMNIFNVSTAASFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGVFLDLTPEQVARSVDTVGVGFMFAPAHHGAMKYAAGPRR 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEU2 (Anthranilate phosphoribosyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 67/160 (41.88%), Postives = 90/160 (56.25%), Query Frame = 3
Query:  225 LISRVDLTEAE-AQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +++++DLT  E +    + +  +  EA I AFL+ +R K ET  EIVG    M + A KVE   L   VDIVGTGGDGAN  N+ST ++ + AA G  VAK             D+LEA GV ++L P  V RC+D  GIGFM +  +H AMK     R+
Sbjct:   14 VVNQLDLTTEEMSDVMREIMTGQCTEAQIGAFLMGMRMKSETIDEIVGAVSVMRELAGKVELKTLDGVVDIVGTGGDGANIFNVSTASAFVIAAAGCTVAKHGNRAVSGKSGSADLLEAAGVYLNLTPVQVARCIDSVGIGFMFAQSHHTAMKHTAGPRR 173          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEPU (Anthranilate phosphoribosyltransferase OS=Pseudomonas putida GN=trpD PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 66/160 (41.25%), Postives = 90/160 (56.25%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++ ++DLT  E +  +  ++  +  EA I AFL+ +R K E+  EIVG    M + A KVE   L   VDIVGTGGDGAN  N+ST +S + AA G  VAK             D+LEA G+ ++L P  V RC+D  GIGFM +  +H AMK     R+
Sbjct:   10 IVGQLDLTTEEMRDVMRQIMTGQCTEAQIGAFLMGMRMKSESIDEIVGAVSVMRELADKVELKSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGCTVAKHGNRAVSGKSGSADLLEAAGIYLNLTPTQVARCIDSLGIGFMFAQSHHSAMKHAAGPRR 169          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_BURMS2.805e-2548.87Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_BURMA2.805e-2548.87Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_BURM92.805e-2548.87Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_BURM72.805e-2548.87Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_AGRT52.805e-2543.05Anthranilate phosphoribosyltransferase OS=Agrobact... [more]
TRPD_ACISJ2.805e-2540.70Anthranilate phosphoribosyltransferase OS=Acidovor... [more]
TRPD_RHIME3.664e-2541.29Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_PSEU53.664e-2540.85Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEU23.664e-2541.88Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEPU3.664e-2541.25Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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