FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_NITOC (Anthranilate phosphoribosyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 65/157 (41.40%), Postives = 92/157 (58.60%), Query Frame = 3
Query:  231 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +R +LT  E  + ++ +++ +A  A I   L+ LR KGET  EI   AR M + ATKV   G   VD  GTGGDGANT NIST ++ + AA G +VAK             DVLEA G+ ++L PE + RC++E G+GF+ +  +H A+KF    R+
Sbjct:   12 TRRNLTSEEMTSVMNLIMSGQATPAQIGGLLIGLRMKGETVEEIAAAARVMRELATKVTVTGPHLVDTCGTGGDGANTFNISTASAFVVAAAGGRVAKHGNRSVSSQCGSADVLEAAGIKLELTPEQIARCIEELGVGFLFAPCHHSAIKFTIAPRR 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BURTA (Anthranilate phosphoribosyltransferase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 65/133 (48.87%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A +  LR K ET GEI   A  M ++A  VE   +A  VDIVGTGGDG++T NIST    +AAA GAKVAK             DVLEALGV IDL PE V   + E G+GFM +  +HPAM+ + PVR+
Sbjct:   39 MAAAIITGLRVKKETIGEITAAATVMREFARHVEVEDNANFVDIVGTGGDGSHTFNISTATMFVAAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLQPEQVAASIAETGMGFMFAPNHHPAMRNIAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_THERP (Anthranilate phosphoribosyltransferase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 66/156 (42.31%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  237 VDLTEA-EAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEG--LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +D+ EA EA +++  +  EA  A I+A +  LR +GE   EI G  + +  +   VE       +D+VGTGGDG  T NIST  + + A  G  VAK             DVLEALGV IDL+P  V RCV+EAGIGFM + ++HPA++   PVR+
Sbjct:   15 LDIDEAMEAMSAI--MTGEATPAQIAALVTALRMRGERETEIAGFVKGLRAHMIPVELQLAQPVIDVVGTGGDGNRTFNISTATAFVVAGAGVPVAKHGNRAMSSRAGSADVLEALGVRIDLNPSAVARCVEEAGIGFMFAQRFHPALRHAAPVRR 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSYIN (Anthranilate phosphoribosyltransferase OS=Psychromonas ingrahamii (strain 37) GN=trpD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 62/168 (36.90%), Postives = 96/168 (57.14%), Query Frame = 3
Query:  207 NELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            +E+++ L +   LT  ++QA  + ++  + D  ++S+ L  L+ KGET  EI G A A++  AT       D  DIVGTGGDG  T+NIST ++ +AAACG KV K             D+L A G+ +D+  +  R+C+D+  I F+ + +YH  M+F  PVR + K
Sbjct:    7 HEILEQLYAAKSLTSEQSQAFFERVVQGQVDPIILSSVLTALKIKGETAQEITGAANALLAQATPFPRPDYDFTDIVGTGGDGLGTINISTASAFVAAACGLKVCKHGSRSVSSKSGSSDLLAAFGLNLDMSAQQARQCLDDLNICFLFAPQYHAGMRFAAPVRAALK 174          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_HALMA (Anthranilate phosphoribosyltransferase OS=Haloarcula marismortui GN=trpD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 69/161 (42.86%), Postives = 90/161 (55.90%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV----EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFV 680
            E I+ +    DLT+AEA+A    +  +A EA I A L  LRAKGET  EI G A  M   A  +    EGL   VD  GTGGD  NT+N+ST ++I+AA  G  +AK             DVLE +GV I+ +P  V   ++  GIGFM++  +HPAMK V
Sbjct:    3 EYIERVTDGDDLTQAEARAVATTVFEDATEAQIGALLTALRAKGETEAEIAGFAEGMRDAARTIRPDREGL---VDTCGTGGDDYNTINVSTTSAIVAAGAGVPIAKHGNYSVSSSSGSADVLEEVGVDIEAEPPDVEETIERDGIGFMLAPVFHPAMKAV 160          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_VIBPA (Anthranilate phosphoribosyltransferase OS=Vibrio parahaemolyticus GN=trpD PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 63/166 (37.95%), Postives = 96/166 (57.83%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            +I+ L  +  LT+ E+Q   D ++  E D  L+++ L  L+ KGET  EI G A+A++  A        D  DIVGTGGDG NT+NIST A+ +AAACG KVAK             D+L++ G+ + +  E  R+ VD+ G+ F+ + +YH  ++   PVR++ K
Sbjct:    4 IINKLYEQQSLTQEESQQLFDIIIRGELDPILMASALTALKIKGETPDEIAGAAKALLANANPFPRPDYDFADIVGTGGDGHNTINISTTAAFVAAACGLKVAKHGNRSVSSKSGSSDLLDSFGINLAMSAEDTRKAVDDIGVAFLFAPQYHGGVRHAMPVRQTMK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_MYCS2 (Anthranilate phosphoribosyltransferase OS=Mycobacterium smegmatis GN=trpD PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 71/170 (41.76%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  198 PCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV--EGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            P +  ++  L +  +L    A  ++D ++   A  A IS F V ++ K  T  E+  LA  M+ +A +V  + +G D VDIVGTGGDGANTVN+ST ASI+ AACG  V K             D LEALGV IDL P+ V R V E GIGF  + ++HP+ K    VR+
Sbjct:   19 PSWPRILGRLTTGQNLPNGHAAWAMDQIMTGAATPAQISGFAVSMKMKRPTASEVRELADIMLTHARRVPTDEIGTDTVDIVGTGGDGANTVNLSTMASIVVAACGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDDVARSVREVGIGFAFAPQFHPSYKHASIVRR 188          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_CLOTH (Anthranilate phosphoribosyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=trpD PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 3
Query:  216 IDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV-EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            I  L+   +L+E+E   +LD ++  +A  A I +F+  LR KGET  EI G A+ M   A K+   +   +D  GTGGDG NT NIST  + +AAA G  VAK             DVLEALGV IDLDP  V+ C+++ GIGF+ +  +H +MK     RK
Sbjct:    6 ISKLVEGKNLSESEIIEALDCIMEGKATPAQIGSFITALRIKGETIEEITGCAKVMRAKADKICPNVDYYIDTCGTGGDGTNTFNISTATAFVAAAGGVYVAKHGNRSVSSKSGSADVLEALGVNIDLDPVQVKECIEKVGIGFIYAPVFHKSMKHAAGPRK 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEPW (Anthranilate phosphoribosyltransferase OS=Pseudomonas putida (strain W619) GN=trpD PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 65/160 (40.62%), Postives = 89/160 (55.62%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++  +DL+  E +  +  ++  +  EA I AFL+ +R K E+  EIVG    M + A KVE   L   VDIVGTGGDGAN  N+ST +S + AA G  VAK             D+LEA G+ ++L P  V RC+D  GIGFM +  +H AMK     R+
Sbjct:   10 IVGHLDLSTEEMRDVMRQIMTGQCSEAQIGAFLMGMRMKSESIDEIVGAVSVMRELADKVELKSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGCTVAKHGNRAVSGKSGSADLLEAAGIYLNLTPTQVGRCIDSLGIGFMFAQSHHSAMKHAAGPRR 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_VIBVY (Anthranilate phosphoribosyltransferase OS=Vibrio vulnificus (strain YJ016) GN=trpD PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 65/166 (39.16%), Postives = 94/166 (56.63%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            +I+ L  +  LTE E+Q   D ++  E D  L+++ L  L+ KGET  EI G A+A++  A        D  DIVGTGGDG NT+NIST A+ +AAACG KVAK             D+L++ G+ + +  E  R  VD  G+ F+ + +YH  +K   PVR++ K
Sbjct:    4 IINKLYLQESLTEQESQQLFDTIIRGELDPILMASALTALKIKGETPDEIAGAAKALLANAQPFPRPDYDFADIVGTGGDGHNTINISTTAAFVAAACGLKVAKHGNRSVSSKSGSSDLLDSFGINLAMSAEDTRSAVDSIGVAFLFAPQYHSGVKHAMPVRQTMK 169          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_NITOC6.250e-2541.40Anthranilate phosphoribosyltransferase OS=Nitrosoc... [more]
TRPD_BURTA6.250e-2548.87Anthranilate phosphoribosyltransferase OS=Burkhold... [more]
TRPD_THERP8.163e-2542.31Anthranilate phosphoribosyltransferase OS=Thermomi... [more]
TRPD_PSYIN8.163e-2536.90Anthranilate phosphoribosyltransferase OS=Psychrom... [more]
TRPD_HALMA8.163e-2542.86Anthranilate phosphoribosyltransferase OS=Haloarcu... [more]
TRPD_VIBPA1.066e-2437.95Anthranilate phosphoribosyltransferase OS=Vibrio p... [more]
TRPD_MYCS21.066e-2441.76Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_CLOTH1.066e-2441.98Anthranilate phosphoribosyltransferase OS=Clostrid... [more]
TRPD_PSEPW1.392e-2440.63Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_VIBVY1.818e-2439.16Anthranilate phosphoribosyltransferase OS=Vibrio v... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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