FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9351 contig Ccv1_Contig9351:11..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_NITWN (Anthranilate phosphoribosyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=trpD PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 71/161 (44.10%), Postives = 94/161 (58.39%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            LI  + +   LT  EA A+ + +++ EA  + +   L+ LR +GET  EI G   AM     +V+   DAVD+VGTGGDG+ +VN+ST AS + A  G  VAK             D L ALG+ IDL PE V RC++EAGIGFM +  +HPAMK V P R
Sbjct:    7 LIGKVATGATLTREEAAAAFNSMMSGEATPSQMGGLLMALRVRGETVDEITGAVSAMRSMMLRVKAPVDAVDVVGTGGDGSGSVNVSTCASFIVAGAGVTVAKHGNRALSSRSGAADCLAALGIRIDLTPEQVGRCINEAGIGFMFAPAHHPAMKNVGPTR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_METAC (Anthranilate phosphoribosyltransferase OS=Methanosarcina acetivorans GN=trpD PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 71/164 (43.29%), Postives = 97/164 (59.15%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD--AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E I  L    DL+  EA+A++  +L+ A++  I AFL+ LRAKGE   EI G  R M +    ++ +     +D  GTGGDG NT+N+ST A+I+ AA G  VAK             DVLEALG+ +DL P  VR+ +++ GIGFM +  +HPAMK V  VRK
Sbjct:    6 EYIKKLEEGSDLSSEEAEAAIGEILSTAEDEEIGAFLLALRAKGEKPQEIAGFVRGMKQAGNTIKPVTPFRVIDTCGTGGDGLNTINVSTAAAIVTAAAGVPVAKHGNRAATSMSGSSDVLEALGIKVDLTPGQVRKTIEKIGIGFMFAPVFHPAMKRVAGVRK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_STRAW (Anthranilate phosphoribosyltransferase OS=Streptomyces avermitilis GN=trpD PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 72/162 (44.44%), Postives = 97/162 (59.88%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            E+++ L+   D +  +   ++D ++  EA +A I+ FLV LRAKGET  EI GL RAM ++A  +E  G  VDIVGTGGDGA TVNIST +SI+ A  GAKV K             DVLE LG+ + L P+ V    +EAGI    + K+HPA++ V   R
Sbjct:   19 EVLNGLLDGRDQSADDTAWAMDRIMRGEATDAQIAGFLVALRAKGETVEEISGLVRAMYEHANLIEVPGATVDIVGTGGDGAKTVNISTMSSIVVAGTGAKVVKHGNRAASSASGSSDVLEKLGINLQLTPKRVAEVAEEAGITICFAVKFHPALRHVAAAR 180          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_GEOSF (Anthranilate phosphoribosyltransferase OS=Geobacter sp. (strain FRC-32) GN=trpD PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 72/173 (41.62%), Postives = 97/173 (56.07%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE---------------GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++ R DL+++E    +D +++ EA  A I+AF+  LR KGET  EI G AR M   AT++                 L   +D+VGTGGDG NT NIST  S + AACG KVAK             DV+EALG+ +++ PE V  C++EAGIGF+ +   H AMKF    RK
Sbjct:    9 VVEREDLSQSEMIQVMDQIMSGEATPAQIAAFITALRMKGETVAEIAGAARVMRDRATRIRVGKNVLDLDRDDINIDLETILDVVGTGGDGTNTFNISTTVSFVVAACGVKVAKHGNRSVSSACGSADVVEALGISLEVTPETVENCINEAGIGFLYAPALHGAMKFAIGPRK 181          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_VEREI (Anthranilate phosphoribosyltransferase OS=Verminephrobacter eiseniae (strain EF01-2) GN=trpD PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 69/138 (50.00%), Postives = 86/138 (62.32%), Query Frame = 3
Query:  288 EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E   A+ +A +  LR K ET GEI   A+ M +++TKV+       VDIVGTGGDGA+T NIST A  +AAA GAKV+K             DV+EALG+ I L PE + RC+ E GIGFM +  +HPAMK V PVRK
Sbjct:   34 ELSPAMTAAIITGLRVKKETIGEITAAAQVMREFSTKVQVPDRKHLVDIVGTGGDGASTFNISTCAMFVAAAAGAKVSKHGGRSVSSKSGSADVMEALGIHIHLAPEAIARCIAEVGIGFMFAPNHHPAMKNVAPVRK 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_ARTS2 (Anthranilate phosphoribosyltransferase OS=Arthrobacter sp. (strain FB24) GN=trpD PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 72/162 (44.44%), Postives = 97/162 (59.88%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            LI  LI+  DLT    + ++D +++ EA  + I+ FLV LR+KGET  EI GL  AM+ +A  V+  G+ +DIVGTGGD  NTVNIST A+++ A  GAKV K             DVLEALGV +DL  E V R  +EAGI F  +  +HP+ +     R+
Sbjct:   17 LISALINGADLTADNTEWAMDTIMSGEATPSQIAGFLVALRSKGETVDEIAGLVEAMLAHANPVDIAGEKLDIVGTGGDQLNTVNISTMAALVCAGAGAKVVKHGNRASSSSSGSADVLEALGVRLDLPIERVARNAEEAGITFCFAQVFHPSFRHTAVPRR 178          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_STRGG (Anthranilate phosphoribosyltransferase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 71/162 (43.83%), Postives = 96/162 (59.26%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            L++ L+   DL+  E   ++D +++ EA +A I+ F V LRAKGET  E+ GL RAM  +A  +E  G  VDIVGTGGD A TVNIST ++I+ A  GAKV K             DVLE LGV ++L P  V    + AGI F  + K+HPA+++    RK
Sbjct:   20 LLNPLLRGEDLSAEETAWAMDRIMSGEATDAQIAGFAVALRAKGETVDEVTGLVRAMYAHANTIEVPGRTVDIVGTGGDLAKTVNISTMSAIVIAGTGAKVVKHGNRAASSASGSSDVLEKLGVNLELTPRRVVEVAEAAGITFCFAVKFHPALRYAAKARK 181          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RHISN (Anthranilate phosphoribosyltransferase OS=Rhizobium sp. (strain NGR234) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 67/155 (43.23%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  231 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +R  L+  +A+A+ + +++  A  + I  FL+ LR +GET  EIVG   AM      VE   DA+DIVGTGGDGA T NIST AS++ A  G  VAK             D L  LGV +D+ PE + RC+ EAG+GFM + ++H AM+ V P R
Sbjct:   13 AREALSREDARAAFEIIMSGAATPSQIGGFLMALRVRGETVDEIVGAVGAMRARMLPVEAPEDAIDIVGTGGDGAGTYNISTLASLIVAGAGVPVAKHGNRALSSKSGTADALSCLGVKLDIGPEAIARCIREAGVGFMFAQQHHSAMRHVGPTR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_ARTAT (Anthranilate phosphoribosyltransferase OS=Arthrobacter aurescens (strain TC1) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 71/162 (43.83%), Postives = 97/162 (59.88%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLL-NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            LI  LI+  DL     + +++ ++  EA  A I+ FLV LRAKGET  E+ GL  AM+++A  ++  G+ +DIVGTGGD  NTVNIST A+++AA  GAKV K             DVLEALGV +DL  E V R  +EAGI F  +  +HP+ +     R+
Sbjct:   17 LISALINGDDLAVGNTEWAMNTIMAGEATPAQIAGFLVALRAKGETVEELAGLVEAMVQHANPIDISGEKLDIVGTGGDRLNTVNISTMAALVAAGAGAKVVKHGNRAASSASGSADVLEALGVRLDLSIEQVARNAEEAGITFCFAQVFHPSFRHTAVPRR 178          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RHOP2 (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain HaA2) GN=trpD PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 71/164 (43.29%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  204 FNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            F  +I  + +   LT  EA  + D +++ +A  + + A L+ LR +GET  EI G    M      V    DAVD+VGTGGDG+ +VN+ST  S + A CG  VAK             DVL ALGV ID+ P+ V RCV EAGIGFM +  +HPAMK V P R
Sbjct:    4 FKAVIAKVATGASLTRDEAANAFDAMMSGDATPSQMGALLMGLRVRGETVDEITGAVTTMRAKMLTVAAPPDAVDVVGTGGDGSGSVNVSTCTSFVVAGCGVPVAKHGNRALSSKSGAADVLNALGVKIDITPDHVGRCVAEAGIGFMFAPTHHPAMKNVGPTR 167          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_NITWN3.541e-2844.10Anthranilate phosphoribosyltransferase OS=Nitrobac... [more]
TRPD_METAC3.541e-2843.29Anthranilate phosphoribosyltransferase OS=Methanos... [more]
TRPD_STRAW4.624e-2844.44Anthranilate phosphoribosyltransferase OS=Streptom... [more]
TRPD_GEOSF4.624e-2841.62Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_VEREI6.039e-2850.00Anthranilate phosphoribosyltransferase OS=Verminep... [more]
TRPD_ARTS26.039e-2844.44Anthranilate phosphoribosyltransferase OS=Arthroba... [more]
TRPD_STRGG1.345e-2743.83Anthranilate phosphoribosyltransferase OS=Streptom... [more]
TRPD_RHISN1.757e-2743.23Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_ARTAT1.757e-2743.83Anthranilate phosphoribosyltransferase OS=Arthroba... [more]
TRPD_RHOP22.295e-2743.29Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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