FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_AERPE (Anthranilate phosphoribosyltransferase OS=Aeropyrum pernix GN=trpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 62/163 (38.04%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLNEA-DEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAV-DIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            L+  L+    LT  EA      +L+ + D +L +A L  LR +GE  GE+VG ARA+   A +VE  G+ + D  GTGGDG +T+N ST A+++AA+ G   AK             DV+E LG  I+   +   R +   G  F+ +  YHPAMK V PVR+
Sbjct:   12 LVKKLLEGEPLTPGEAAQLAQAMLDPSFDNSLKAAALAALRVRGEQPGEVVGFARALRDRAVRVEYGGEVLLDTAGTGGDGLSTLNASTAAALVAASLGVPTAKHGNRSFSSKSGSADVMEMLGYNINHRADRAVRMLSTLGFTFLYAPNYHPAMKAVVPVRR 174          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_SHEON (Anthranilate phosphoribosyltransferase OS=Shewanella oneidensis GN=trpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 60/171 (35.09%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAM------IKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            L+D L     LT  +  +    L+  E +E +++  L+ L+ +GET  EI G A AM        Y       G  +DIVGTGGDG NT+NIST A+ +AAA GAKVAK             D+L   G+ + + PE    C++   + F+ +  YH  +K   PVR++ K
Sbjct:    9 LLDILFQGKALTREQTASLFSVLIQGEMNETVMAGMLMALKIRGETIEEISGAADAMRAAAKPFPYPESSRSQG-VIDIVGTGGDGFNTINISTTAAFVAAAAGAKVAKHGNRSVSSKSGSSDLLAQFGIDLTMSPELASHCLEALNLCFLFAPHYHGGVKHAVPVRQTLK 178          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PROMT (Anthranilate phosphoribosyltransferase OS=Prochlorococcus marinus (strain NATL2A) GN=trpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 60/173 (34.68%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  189 PLTPCFNELIDCLISRVDLTEAEAQASLD-YLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKS 698
            P+T  F  +++ L++  DLTE ++   ++ +L N+ +     AFL   RAKG +  E+  +A+ +   +T    L   D VD  GTGGDGANT NISTG + ++AA G K+AK             DVLE LG+ +++    V   + + GI F+ +  +HP++  + P+RKS
Sbjct:    6 PIT--FPVILESLLASNDLTEEQSNYLMNSWLDNKIEPVQTGAFLAAFRAKGVSGDELSAMAKILQDASTTPSDLPSFDLVDTCGTGGDGANTFNISTGVAFVSAALGVKIAKHGNRSASGKVGSADVLENLGLPLNVSSGKVVEALKKLGITFLFAPSWHPSLVNLAPLRKS 176          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_CHLP8 (Anthranilate phosphoribosyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=trpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 59/163 (36.20%), Postives = 81/163 (49.69%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLL-NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ELI  L++  DL+  E +A +D ++ N   +A   A L LL+ KG T  E +G    ++   T +     AVD  GTGGD   T NIST A+ +AA  G  +AK             DVLEALG  +DL          E G  F+ +  YHP+MK V  +R+
Sbjct:    5 ELIQKLLAGADLSAQEMEACIDSIMENRFTDAGTGAILALLQKKGVTPTEAIGAYENLMTRVTPITLPAHAVDTCGTGGDHRGTFNISTAAAFIAAGAGVPIAKHGNRSITSKCGSADVLEALGYRVDLPASATEEQFRETGFAFLFAPLYHPSMKAVASIRR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BRUO2 (Anthranilate phosphoribosyltransferase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=trpD PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  255 EAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +A+A+ D +++ +A  + I  FL+ LR +GET  EI G   +M      V    DA+DIVGTGGD + + N+S+  + + A  G  VAK             D L ALG+ I+ D + + R + EAG+GFM +  +H AM+ V P R
Sbjct:   21 DAKAAFDIMMSGQATPSQIGGFLMALRVRGETVPEIAGAVASMRSRMIPVIAPDDAMDIVGTGGDQSGSYNVSSCTAFVVAGAGVPVAKHGNRALSSRSGAADALAALGINIEADADTIGRSISEAGLGFMFAPMHHSAMRHVGPSR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BRUME (Anthranilate phosphoribosyltransferase OS=Brucella melitensis GN=trpD PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  255 EAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +A+A+ D +++ +A  + I  FL+ LR +GET  EI G   +M      V    DA+DIVGTGGD + + N+S+  + + A  G  VAK             D L ALG+ I+ D + + R + EAG+GFM +  +H AM+ V P R
Sbjct:   21 DAKAAFDIMMSGQATPSQIGGFLMALRVRGETVPEIAGAVASMRSRMIPVIAPDDAMDIVGTGGDQSGSYNVSSCTAFVVAGAGVPVAKHGNRALSSRSGAADALAALGINIEADADTIGRSISEAGLGFMFAPMHHSAMRHVGPSR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BRUMB (Anthranilate phosphoribosyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=trpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  255 EAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +A+A+ D +++ +A  + I  FL+ LR +GET  EI G   +M      V    DA+DIVGTGGD + + N+S+  + + A  G  VAK             D L ALG+ I+ D + + R + EAG+GFM +  +H AM+ V P R
Sbjct:   21 DAKAAFDIMMSGQATPSQIGGFLMALRVRGETVPEIAGAVASMRSRMIPVIAPDDAMDIVGTGGDQSGSYNVSSCTAFVVAGAGVPVAKHGNRALSSRSGAADALAALGINIEADADTIGRSISEAGLGFMFAPMHHSAMRHVGPSR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BRUAB (Anthranilate phosphoribosyltransferase OS=Brucella abortus GN=trpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  255 EAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +A+A+ D +++ +A  + I  FL+ LR +GET  EI G   +M      V    DA+DIVGTGGD + + N+S+  + + A  G  VAK             D L ALG+ I+ D + + R + EAG+GFM +  +H AM+ V P R
Sbjct:   21 DAKAAFDIMMSGQATPSQIGGFLMALRVRGETVPEIAGAVASMRSRMIPVIAPDDAMDIVGTGGDQSGSYNVSSCTAFVVAGAGVPVAKHGNRALSSRSGAADALAALGINIEADADTIGRSISEAGLGFMFAPMHHSAMRHVGPSR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BRUA2 (Anthranilate phosphoribosyltransferase OS=Brucella abortus (strain 2308) GN=trpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  255 EAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +A+A+ D +++ +A  + I  FL+ LR +GET  EI G   +M      V    DA+DIVGTGGD + + N+S+  + + A  G  VAK             D L ALG+ I+ D + + R + EAG+GFM +  +H AM+ V P R
Sbjct:   21 DAKAAFDIMMSGQATPSQIGGFLMALRVRGETVPEIAGAVASMRSRMIPVIAPDDAMDIVGTGGDQSGSYNVSSCTAFVVAGAGVPVAKHGNRALSSRSGAADALAALGINIEADADTIGRSISEAGLGFMFAPMHHSAMRHVGPSR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BRUA1 (Anthranilate phosphoribosyltransferase OS=Brucella abortus (strain S19) GN=trpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  255 EAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +A+A+ D +++ +A  + I  FL+ LR +GET  EI G   +M      V    DA+DIVGTGGD + + N+S+  + + A  G  VAK             D L ALG+ I+ D + + R + EAG+GFM +  +H AM+ V P R
Sbjct:   21 DAKAAFDIMMSGQATPSQIGGFLMALRVRGETVPEIAGAVASMRSRMIPVIAPDDAMDIVGTGGDQSGSYNVSSCTAFVVAGAGVPVAKHGNRALSSRSGAADALAALGINIEADADTIGRSISEAGLGFMFAPMHHSAMRHVGPSR 167          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_AERPE7.906e-2038.04Anthranilate phosphoribosyltransferase OS=Aeropyru... [more]
TRPD_SHEON1.033e-1935.09Anthranilate phosphoribosyltransferase OS=Shewanel... [more]
TRPD_PROMT1.033e-1934.68Anthranilate phosphoribosyltransferase OS=Prochlor... [more]
TRPD_CHLP81.033e-1936.20Anthranilate phosphoribosyltransferase OS=Chloroba... [more]
TRPD_BRUO21.033e-1936.73Anthranilate phosphoribosyltransferase OS=Brucella... [more]
TRPD_BRUME1.033e-1936.73Anthranilate phosphoribosyltransferase OS=Brucella... [more]
TRPD_BRUMB1.033e-1936.73Anthranilate phosphoribosyltransferase OS=Brucella... [more]
TRPD_BRUAB1.033e-1936.73Anthranilate phosphoribosyltransferase OS=Brucella... [more]
TRPD_BRUA21.033e-1936.73Anthranilate phosphoribosyltransferase OS=Brucella... [more]
TRPD_BRUA11.033e-1936.73Anthranilate phosphoribosyltransferase OS=Brucella... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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