FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RUTMC (Anthranilate phosphoribosyltransferase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=trpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLA---RAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + I  +I + DL+E E    + D +  +  +A I  FLV L  KGE+  EI   A   R+++K  T ++     VD  GTGGDG    NIST  + + AA G  VAK             DVL+A GV +D+  E + +C+++ GIGFM +  +H AMK V   RK
Sbjct:    5 QAIKQIIKKQDLSENEMHKVMNDIMTGKTTDAQIGGFLVGLAIKGESVDEITAAAKTMRSLVKSVT-IKNTKHLVDTCGTGGDGLGLFNISTACTFVVAAAGGSVAKHGNSSISSKSGSADVLKAAGVNLDMSVEKISKCIEKIGIGFMFAPFHHIAMKHVIEPRK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_HELP2 (Anthranilate phosphoribosyltransferase OS=Helicobacter pylori (strain P12) GN=trpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E+++ L  + DL++ E +     +++E      + A L  L+ KGE+F EI   A  ++++A K    G D +D  GTGGDG  T+NIST A+++A++ G  +AK             D+LE LGV I++DP  +  C  +   GF+ +  YH + K   P+RK
Sbjct:    3 EILNALYHQKDLSDKEVKKLFTLIIHEKVSPVQLGAILCALKIKGESFKEISVAATTLLEHAPKPFDSGLDLIDNCGTGGDGLKTINISTIAALIASSMGLSMAKHGSRSVSSHSGSADLLENLGVNIEMDPTQLENCFKQTHFGFLFAPLYHQSFKKSAPLRK 166          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_UNCTG (Anthranilate phosphoribosyltransferase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=trpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 61/163 (37.42%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E I  +++R +LT  + +  ++ +++  A +A I++FL  LR KGET  EI   A  M +   K+    D +DIVGTGGD   T NIST +S + AA G  VAK             D+LE LGV I L P+     + + G+ F+M+  +H +MK+V  VRK
Sbjct:    4 EAIYEIVNRNNLTIDKTKEVMNRIMDGGATDAQIASFLTSLRLKGETIEEITACAMVMREKCQKLNPEFDVLDIVGTGGDELATFNISTISSFIIAAAGVPVAKHGNRSVSSKCGSADLLEVLGVNIMLTPQQCEAILKKVGMCFLMAQTFHSSMKYVAKVRK 166          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_SULTO (Anthranilate phosphoribosyltransferase OS=Sulfolobus tokodaii GN=trpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 64/164 (39.02%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKS 698
            EL+  +I R +LTE EA++  + ++  E  E + + FLV L  KGE+  EI G A+AM   A  +     A+D  GTGGDG NT+N+ST  ++L +     VAK             DVLEALG  I + PE   + + E+   F+ +  YHPAMK V  VRK+
Sbjct:    5 ELLRKIIRRENLTEDEARSIANSVMKAEVPEIVTAGFLVGLATKGESVEEITGFAKAMRDNALHIN-FPSALDTAGTGGDGLNTLNVSTAVALLISQV-YPVAKHGNRAVSGKSGSADVLEALGYNIIVKPELAEKLIKESKFVFLFAQLYHPAMKNVANVRKT 166          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_MANSM (Anthranilate phosphoribosyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=trpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 54/140 (38.57%), Postives = 77/140 (55.00%), Query Frame = 3
Query:  288 EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            E     ++  L+ L+ +GET  EI G   A++  A           DIVGTGGD A+T+NIST ++I+AA+ G K+AK             DVL ALGV I +  E  R+ +DE GI F+ + +YH   K+  PVR++ K
Sbjct:   41 ELSNEQLAGALIALKIRGETIDEITGAVTALLAAAEPFPAPDYPFADIVGTGGDNADTINISTASAIVAASMGLKIAKHGNRSVSSKTGASDVLTALGVNIRMSTEQARKALDEIGIAFIFAQQYHLGFKYAGPVRQALK 180          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_GRABC (Anthranilate phosphoribosyltransferase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=trpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  243 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            L E EA A+ D ++  +A  + I+A ++ LR +GET  E+ G  RA+  +   ++    A+D+ GTGGDGA T+NIST  + + A CG  +AK             DVL ALGV IDL  E     + +    F+ +  +HPA++     R
Sbjct:   25 LNEEEAFAAFDLIMRGQATSSQIAALVMALRLRGETEAEMGGAVRALRSHMIPIKAPDGAIDVCGTGGDGAGTLNISTAVTFVVAGCGIPIAKHGNRALSSRSGAADVLTALGVQIDLGTERQEAILHDEHCAFLFAPHFHPALRHAAEAR 175          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_FLAJ1 (Anthranilate phosphoribosyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=trpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 55/163 (33.74%), Postives = 93/163 (57.06%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +++ LI+   L++ EA+  L  + + + + + ISAFL +   +  T  E+ G   A+++   +++    + +D+ GTGGDG +T NIST AS +AA  G KVAK             +V+E +G+    DP  + +C+D+AGI  + +  +HPAMK V P+RK
Sbjct:    4 ILNKLINHEVLSKEEAKNVLINISSGQYNPSQISAFLTVFMMRSITIDELSGFREALLELCIRIDLSAYNTIDLCGTGGDGKDTFNISTLASFVAAGAGIKVAKHGNYGVSSISGSSNVMEKMGIKFSNDPSFLEKCIDQAGICVLHAPLFHPAMKNVGPIRK 166          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPG_THEMA (Anthranilate synthase component II OS=Thermotoga maritima GN=trpGD PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            L+   DLT  E++  ++++++  A +A I+ FLV LR K ET  E+ G+A  M + +  ++      VD  GTGGDG  T NIST  + + AA G  VAK             DVLEA G  ++  PE + R + E G  F+ +   HPAMK V P R+  K
Sbjct:  257 LVEFEDLTFEESRQVMNFIMSGNATDAQIAGFLVALRMKEETGDELGGMASVMREKSIHIKAPSPRTVDTCGTGGDGFGTFNISTTTAFVVAAAGIPVAKHGNRSVSSKVGSADVLEAGGYKLEKTPEEMERELKETGFSFLFAPLLHPAMKHVMPARRQLK 418          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_YERPS (Anthranilate phosphoribosyltransferase OS=Yersinia pseudotuberculosis GN=trpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            L + L     +++ E+Q     ++  E + + ++A L+ ++ +GET  EI G A+A++  A           DIVGTGGDG N++NIST ++ +AA+CG KVAK             D+L A G+ +D+  E  R  +D+ G+ F+ + +YH   +   PVR+  K
Sbjct:    4 LFEKLFRAESMSQEESQQLFAAIVRGELEPSQLAAVLISMKVRGETPAEIAGAAQALLADAQHFPRPDYLFADIVGTGGDGTNSINISTASAFVAASCGVKVAKHGNRSVSSRSGSSDLLAAFGIRLDMSAEQSRLALDDLGVCFLFAPQYHTGFRHAMPVRQQLK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_YERPP (Anthranilate phosphoribosyltransferase OS=Yersinia pestis (strain Pestoides F) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            L + L     +++ E+Q     ++  E + + ++A L+ ++ +GET  EI G A+A++  A           DIVGTGGDG N++NIST ++ +AA+CG KVAK             D+L A G+ +D+  E  R  +D+ G+ F+ + +YH   +   PVR+  K
Sbjct:    4 LFEKLFRAESMSQEESQQLFAAIVRGELEPSQLAAVLISMKVRGETPAEIAGAAQALLADAQHFPRPDYLFADIVGTGGDGTNSINISTASAFVAASCGVKVAKHGNRSVSSRSGSSDLLAAFGIRLDMSAEQSRLALDDLGVCFLFAPQYHTGFRHAMPVRQQLK 169          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_RUTMC1.349e-1936.75Anthranilate phosphoribosyltransferase OS=Ruthia m... [more]
TRPD_HELP21.349e-1933.54Anthranilate phosphoribosyltransferase OS=Helicoba... [more]
TRPD_UNCTG1.761e-1937.42Anthranilate phosphoribosyltransferase OS=Uncultur... [more]
TRPD_SULTO1.761e-1939.02Anthranilate phosphoribosyltransferase OS=Sulfolob... [more]
TRPD_MANSM1.761e-1938.57Anthranilate phosphoribosyltransferase OS=Mannheim... [more]
TRPD_GRABC1.761e-1935.10Anthranilate phosphoribosyltransferase OS=Granulib... [more]
TRPD_FLAJ11.761e-1933.74Anthranilate phosphoribosyltransferase OS=Flavobac... [more]
TRPG_THEMA2.300e-1937.04Anthranilate synthase component II OS=Thermotoga m... [more]
TRPD_YERPS2.300e-1932.53Anthranilate phosphoribosyltransferase OS=Yersinia... [more]
TRPD_YERPP2.300e-1932.53Anthranilate phosphoribosyltransferase OS=Yersinia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
back to top