FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPG_ECOLI (Anthranilate synthase component II OS=Escherichia coli (strain K12) GN=trpD PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  306 ISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            ++A LV ++ +GE   EI G A A+++ A           DIVGTGGDG+N++NIST ++ +AAACG KVAK             D+L A G+ +D++ +  R+ +DE G+ F+ + KYH   +   PVR+  K
Sbjct:  235 LAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLK 368          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_SPHAL (Anthranilate phosphoribosyltransferase OS=Sphingopyxis alaskensis GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 3
Query:  258 AQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKS 698
            A A    L   A +  I+AFLV L  +GET  EI   A+AM      +E    A+D+ GTGGDG +T+N+ST  SI+ AAC   VAK             D LEALG+ ++      +  + + GI F+ +   HPAMK + P+RK+
Sbjct:   20 AHAFATMLDGGARDEQIAAFLVALADRGETMVEIAAAAQAMRDRLIPIEAPAGAIDVCGTGGDGHHTLNVSTAVSIVVAACDVPVAKHGNRAASSKSGAADTLEALGLDMERADRQAQEQLADLGICFLFAGTRHPAMKRIMPIRKA 166          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PYRFU (Anthranilate phosphoribosyltransferase OS=Pyrococcus furiosus GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 52/139 (37.41%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  279 LLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +L E  E  I+A+L  L+ KG T  EI G A+AM   A K++ LG+ +D  GTGGD + T+N+ST ++++ +    KVAK             ++LEALG+ I + PE  +  +++    F+ +  YHPA+K + PVRK
Sbjct:   22 ILKEESEVRIAAYLAALQTKGYTSEEIAGFAKAMRDNAIKLD-LGEVLDTAGTGGDKSFTINVSTASALILSEY-TKVAKHGNVSVTSRSGSANLLEALGINIKISPEKAKEMIEKVNFTFIFAPMYHPALKRIMPVRK 158          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PROMM (Anthranilate phosphoribosyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 60/168 (35.71%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  204 FNELIDCLISRVDLTEAEAQASLD-YLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKS 698
            ++++++ L+   +L E EA A ++ +L  +       AFL  LRAKG T  E+ G+A+ +         L D   VD  GTGGDGA+T NIST  +  AAACGA VAK             DVLE LG+ +      V   + E G+ F+ +  +HPA+  + P+R+S
Sbjct:   11 WSQILEMLLEGQNLPEVEATALMEAWLAEQLTPVQTGAFLAALRAKGVTGNELSGMAQVLRGACPLPCPLPDIPMVDTCGTGGDGADTFNISTAVAFTAAACGANVAKHGNRSASGKVGSADVLEGLGLQLKAPLVSVVEALVEVGVTFLFAPAWHPALVNLAPLRRS 178          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_LISW6 (Anthranilate phosphoribosyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 60/166 (36.14%), Postives = 91/166 (54.82%), Query Frame = 3
Query:  216 IDCLISRVDLTEAEAQASLDYLLNEADEALIS-----AFLVLLRAKGETFGEIVGLARAMIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++ L+ +V   E   +A ++ L  E  E  +S     AFL+ L+ KGET  E+ G+A AM + A +V    G A+D  GTGGD +N+ NIST ++ + AA G  VAK             DV + LG+ I++ PE +   +++ GI F+ +   HP MK+V  VRK
Sbjct:    1 MESLLQKVYDQENLTKAEMNILATEIFEGRLSKTKMAAFLMALKVKGETAEEMAGIAEAMQEVAIQVAFPAGTAMDNCGTGGDKSNSFNISTTSAFVLAAAGIPVAKHGNRSISSRSGSADVCQELGIDINMRPEDMTYLLEKVGIAFLFAPHVHPNMKYVMDVRK 166          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_LACPL (Anthranilate phosphoribosyltransferase OS=Lactobacillus plantarum GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  237 VDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            +D T ++ Q   + +  +A +A I +FL  L  K  T  EI G A AM   A   +     ++IVGTGGD +N+ NIST  +++ AA G  V K             DVLEALG+ IDL P      ++     FM + +YH AM+FV P R+  K
Sbjct:   15 LDFTMSQ-QVITEIMKGQATDAQIGSFLTALAIKKATIDEIAGAATAMRSQALPFKVKRPTLEIVGTGGDRSNSFNISTTTALVVAAAGVPVTKHGNRAASSKSGAADVLEALGIKIDLTPAQSLALLERTNFAFMYAREYHQAMRFVAPARQQIK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_IDILO (Anthranilate phosphoribosyltransferase OS=Idiomarina loihiensis GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 56/165 (33.94%), Postives = 90/165 (54.55%), Query Frame = 3
Query:  216 IDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATK-VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            +  L+S   LT+ + +     L+  E ++  +SA L+ ++ +GET  E+ G A A++  A   +      +D  GTGGDG+NT+NIST A+++AA+ G  VAK             DVLEAL + ++LDP      + + G  F+ +  YHP +K   PVR++ K
Sbjct:    4 LQTLMSGESLTQDQTREFFQRLIKGELNDIQVSAALIAMKMRGETPAELAGAAEAILSAAKPFLRSDTTVIDSCGTGGDGSNTINISTTAALVAASMGLAVAKHGNRSVSSRSGSADVLEALKLRVNLDPSDASTQLADNGFCFLFAPHYHPGIKHAMPVRQTLK 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_GRAFK (Anthranilate phosphoribosyltransferase OS=Gramella forsetii (strain KT0803) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEA-QASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKS 698
            EL++ LIS   ++  EA Q   +    + ++  I+AFL +   +  T  E+ G   A+++   KV+    +AVD+ GTGGDG +T N+ST +S + A  G KVAK             +V+E LG+    D   + +C+D+A I  + +  +HPAMK V PVRKS
Sbjct:    3 ELLNRLISHETISTDEAKQVIFNISEGKYNDTQIAAFLTVYMMRSITIEELEGFRDALLELCIKVDLSAYNAVDLCGTGGDGKDTFNVSTTSSFVTAGAGVKVAKHGNYGVSSVSGSSNVMEYLGIKFSSDAGFLEKCIDQANICILHAPLFHPAMKNVGPVRKS 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_ERYLH (Anthranilate phosphoribosyltransferase OS=Erythrobacter litoralis (strain HTCC2594) GN=trpD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 55/152 (36.18%), Postives = 84/152 (55.26%), Query Frame = 3
Query:  243 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +++ EA+    ++L+ EA E  I+ FL+ +  + ET  EI G ARA+      VE    AVD  GTGGDG +T+N+ST  S++ AA G  VAK             D LEALG+ ++       + + E GI F+ +  +HPAM  ++P+R+
Sbjct:   11 MSQDEAEEVFGWILDGEASEEEIARFLLAMTERSETADEIAGAARALRDRLIPVEAPEGAVDCCGTGGDGHHTLNVSTAVSLVVAAAGVPVAKHGNRAASSKSGAADTLEALGLDMEAVGRTAEKTLAEIGICFLFAKNHHPAMGRIQPIRQ 162          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_SULAC (Anthranilate phosphoribosyltransferase OS=Sulfolobus acidocaldarius GN=trpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  240 DLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKS 698
            DL+  +++A  + L+  E  E  +SA L  L  KGE+F EIVG ARAM   A K+    +A+D  GTGGDG  T+N+ST  +I+ +     VAK             DVLEALG  I++ PE   + + E    F+ +  YHPAMK V  VRK+
Sbjct:   10 DLSTEDSEAIANALMKGEIPEIQVSALLTSLAMKGESFEEIVGFARAMRNNAIKIS-YPEALDTAGTGGDGLGTINVSTITAIILSQL-FPVAKHGNRSVSGKSGSADVLEALGYNINIAPELANKLIKENNFVFLFAQIYHPAMKNVANVRKT 161          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPG_ECOLI3.004e-1938.06Anthranilate synthase component II OS=Escherichia ... [more]
TRPD_SPHAL3.004e-1938.10Anthranilate phosphoribosyltransferase OS=Sphingop... [more]
TRPD_PYRFU3.004e-1937.41Anthranilate phosphoribosyltransferase OS=Pyrococc... [more]
TRPD_PROMM3.004e-1935.71Anthranilate phosphoribosyltransferase OS=Prochlor... [more]
TRPD_LISW63.004e-1936.14Anthranilate phosphoribosyltransferase OS=Listeria... [more]
TRPD_LACPL3.004e-1936.54Anthranilate phosphoribosyltransferase OS=Lactobac... [more]
TRPD_IDILO3.004e-1933.94Anthranilate phosphoribosyltransferase OS=Idiomari... [more]
TRPD_GRAFK3.004e-1935.15Anthranilate phosphoribosyltransferase OS=Gramella... [more]
TRPD_ERYLH3.004e-1936.18Anthranilate phosphoribosyltransferase OS=Erythrob... [more]
TRPD_SULAC3.924e-1940.26Anthranilate phosphoribosyltransferase OS=Sulfolob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
back to top