FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_HAES2 (Anthranilate phosphoribosyltransferase OS=Haemophilus somnus (strain 2336) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 59/167 (35.33%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            +LI  L     L + + Q    Y++  +     ++  L+ L+ +GE   EI G  +A+I  A     +     DIVGTGGD ANT+NIST A+I+AA  G KV K             DVL ALG+ IDL  E  ++ +D   + F+ + +YH   K V PVR+  K
Sbjct:    5 QLISQLFDGQHLNQEQIQQLFHYIIQGQLSNEQLAGVLIALKFRGEQTDEISGAVKAIIANAKPFPFIDYPFADIVGTGGDNANTINISTTAAIVAATLGYKVVKHGNRSVSSKSGASDVLNALGIKIDLSAEKSKQALDNLNLCFLWAQQYHLGFKHVAPVRQILK 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_FRATN (Anthranilate phosphoribosyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 55/162 (33.95%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            ++D L +  DL+  E+    DY +  + +  L ++ L  L+ K ET  EI     A++    +   + GD   IVGTGGDG NT+NIST A+I+AA  G KVAK             D+LE+ GV I+L P+  ++C++   +GF+ +  Y    +++R  R
Sbjct:    7 IVDKLYNLEDLSYQESYQLFDYFIKGQIELPLQTSILTALKLKKETSIEIASAVEALLDNTKEFPKIKGDLAGIVGTGGDGFNTINISTTAAIVAATAGYKVAKHGGRSVSSKSGSFDLLESFGVNIELAPDQTKQCLELYNLGFLFAPFYSEGFRYIREAR 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_ERWCT (Anthranilate phosphoribosyltransferase OS=Erwinia carotovora subsp. atroseptica GN=trpD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 54/191 (28.27%), Postives = 97/191 (50.79%), Query Frame = 3
Query:  138 ELTAIQTPQPAVSDNTRPLTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            +L++ Q        +T         +++ L     ++  E+QA    ++  E + + ++A L+ ++ +GE   EI G A A++  A           DIVGTGGDG N++NIST ++ +AA+CG K+AK             D+L A G+ +D+  +  R+ +D+ G+ F+ + +YH   +   PVR+  K
Sbjct:    2 QLSSTQPSSKTQEPSTAQDVITMQHILEKLYGANSISRQESQALFGAIIRGELEASQLAAALISMKVRGEHPDEIAGAATALLADAQPFPRPDYLFADIVGTGGDGTNSINISTASAFVAASCGLKIAKHGNRSVSSRSGSSDLLSAFGIKLDMSAQDSRQALDDLGVCFLFAPQYHLGFRHAMPVRQQLK 192          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_STRGC (Anthranilate phosphoribosyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 59/165 (35.76%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEG-LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKS 698
            E+I  L    DL+ AE    ++ ++  +  E+ I+A L+ L+ KGET  E   LA+ M  +A ++   +  A+D  GTGGD + + NIST A+ + A  G K+AK             DVLEALG+ +DLD   + +  ++ GI F+ +   HPAMK++ P R S
Sbjct:    3 EIIAKLADFKDLSSAEMTDVIERIVTGQVAESQIAALLLGLKMKGETIEERTALAQVMRGHAKQIPTTIRTAMDNCGTGGDKSFSFNISTTAAFVLAGGGIKMAKHGNRSISSKSGSADVLEALGINLDLDATSLGKVFEQTGIVFLFAKNMHPAMKYIMPARLS 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PHOLL (Anthranilate phosphoribosyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=trpD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 56/162 (34.57%), Postives = 85/162 (52.47%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAV-DIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            L +   LT+ E+Q     ++  E  E  ++A L+ ++ +GE   EI G A+A++  A           DIVGTGGDGAN++NIST ++ +A+AC  K+AK             D+L A G+ +D+  E  R  +DE GI F+ +  YH       PVR+  K
Sbjct:    8 LFNAQTLTQQESQQLFAAIIQGELSEPQLAAVLISMKLRGEQPQEIAGAAQALLANALPFPRPDYTFCDIVGTGGDGANSINISTASAFVASACQIKIAKHGNRSVSSQSGSSDLLAAFGIALDISAECARSALDEIGICFLFAPHYHLGFCHAMPVRQQLK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PELLD (Anthranilate phosphoribosyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNE--ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            EL++ L +   LT  E +  +D ++    ++EA+I A L L++  G T   + G   ++++ AT ++    AVD  GTGGD A T NIST A+I+A A G  +AK             DVLE LG  I+L PE         G  ++ +  YHP+MK V  +RK
Sbjct:    5 ELLEKLQAGQQLTYDETKRCMDGIMAGLFSEEAII-ALLTLMQDNGITADAVAGARESIMQRATPIQLDERAVDTCGTGGDSAGTFNISTAAAIIANAAGVSIAKHGNRAVTSRCGSADVLEELGFCIELPPEATEELYGRTGFAYLHAPLYHPSMKAVAAIRK 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_HELPG (Anthranilate phosphoribosyltransferase OS=Helicobacter pylori (strain G27) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 53/164 (32.32%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++++ L  + DL + E +     +++E      + A L  L+ KGE+F EI   A  ++++A K    G D +D  GTGGDG  T+NIST A+++A++ G  +AK             D+LE LGV I+++P  +  C  +   GF+ +  YH + K   P+RK
Sbjct:    3 DILNALYHQKDLNDGEVKKLFTLIIHEKVSPVQLGAILCALKIKGESFKEISVAATTLLEHAPKPFNSGLDLIDNCGTGGDGLKTINISTIAALIASSMGLPMAKHGSRSVSSHSGSADLLENLGVNIEMNPMQLENCFKQTHFGFLFAPLYHQSFKKSAPLRK 166          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_GLUOX (Anthranilate phosphoribosyltransferase OS=Gluconobacter oxydans GN=trpD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  243 LTEAEAQASLDYLL-NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKS 698
            L   EA+ +   ++  E D   ++AFL  L+ +GETF E+ G  +A+  + T +  +   A+D+ GTGGDG  T+N+ST  + + A  G  VAK             DVLE LG+    D E   R + E G+ F+ + ++HPAM+   PVRK+
Sbjct:   20 LDSHEAETAFHAIMAGEVDPVQLAAFLTALKLRGETFAELTGAVQAVRHHMTVLPDVPAGAIDVCGTGGDGLKTLNVSTAVAFVLAGLGVPVAKHGNRALSSASGATDVLEVLGIPPTDDLELQGRRLREDGLVFLAAPQHHPAMRHAAPVRKA 173          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_CLAM3 (Anthranilate phosphoribosyltransferase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=trpD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 62/171 (36.26%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  189 PLTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTV-NISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            P  P +  LI  LI    L+ +E+  ++  ++  EA  A +   LV LRA GET  EIVG   A+++ A  ++    A+DIVGTGGD    V NIS+ AS++AAA G  V K             DVL ALGV + + PE V   + E GI +  +  +HP  +     R+
Sbjct:    2 PSAPTWPALITTLIEGRHLSVSESTWAMRQVMRGEATPAQLGGLLVALRASGETVDEIVGFRDAVLEEALPLDADPRALDIVGTGGDPYGAVLNISSVASVIAAAAGVPVIKHGNRGASSASGASDVLTALGVDLSITPERVAEVLRETGITYAHAALFHPGFRHAAATRR 172          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PECCP (Anthranilate phosphoribosyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=trpD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 51/166 (30.72%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            +++ L     ++  E+QA    ++  E + + ++A L+ ++ +GE   EI G A A++  A           DIVGTGGDG N++NIST ++ +AA+CG K+AK             D+L A G+ +D+  +  R+ +D+ G+ F+ + +YH   +   PVR+  K
Sbjct:   27 ILEKLYRAESISRQESQALFGAIIRGELEASQLAAALISMKVRGEHPDEIAGAATALLADAQPFPRPDYLFADIVGTGGDGTNSINISTASAFVAASCGLKIAKHGNRSVSSRSGSSDLLSAFGIKLDMSAQDSRQALDDLGVCFLFAPQYHLGFRHAMPVRQQLK 192          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_HAES21.142e-1835.33Anthranilate phosphoribosyltransferase OS=Haemophi... [more]
TRPD_FRATN1.142e-1833.95Anthranilate phosphoribosyltransferase OS=Francise... [more]
TRPD_ERWCT1.142e-1828.27Anthranilate phosphoribosyltransferase OS=Erwinia ... [more]
TRPD_STRGC1.491e-1835.76Anthranilate phosphoribosyltransferase OS=Streptoc... [more]
TRPD_PHOLL1.491e-1834.57Anthranilate phosphoribosyltransferase OS=Photorha... [more]
TRPD_PELLD1.491e-1835.37Anthranilate phosphoribosyltransferase OS=Pelodict... [more]
TRPD_HELPG1.491e-1832.32Anthranilate phosphoribosyltransferase OS=Helicoba... [more]
TRPD_GLUOX1.491e-1835.06Anthranilate phosphoribosyltransferase OS=Gluconob... [more]
TRPD_CLAM31.491e-1836.26Anthranilate phosphoribosyltransferase OS=Clavibac... [more]
TRPD_PECCP1.947e-1830.72Anthranilate phosphoribosyltransferase OS=Pectobac... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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