FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_OCHA4 (Anthranilate phosphoribosyltransferase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=trpD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  243 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            L+  +++A+ D +++ +A  + I   L+ LR +GET  EI G   +M      V    +A+DIVGTGGD + + N+S+ ++ + A  G  VAK             D L ALG+ I+ D   + R + EAG+GFM +  +H AM+ V P R
Sbjct:   17 LSLEDSRAAFDIMMSGQATPSQIGGLLMALRVRGETVPEIAGAVASMRSRMLGVSAPNNAIDIVGTGGDQSGSYNVSSCSAFVVAGAGVPVAKHGNRALSSRSGAADALAALGINIEADASIIGRSITEAGLGFMFAPMHHSAMRHVGPSR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_HELPH (Anthranilate phosphoribosyltransferase OS=Helicobacter pylori (strain HPAG1) GN=trpD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 52/164 (31.71%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E+++ L  + DL + E +     +++E      +   L  L+ KGE+F EI   A  ++++A K    G D +D  GTGGDG  T+N+ST A+++A++ G  +AK             D+LE LGV I+++P  +  C  +   GF+ +  YH + K   P+RK
Sbjct:    3 EILNALYHQKDLNDEEVKKLFTLIIHEKVSPVQLGTILCALKIKGESFKEISVAATTLLEHAPKPFDSGLDLIDNCGTGGDGLKTINVSTIAALIASSMGLSMAKHGSRSVSSHSGSADLLENLGVNIEMNPTQLENCFKQTHFGFLFAPLYHQSFKKSAPLRK 166          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_LEPIN (Anthranilate phosphoribosyltransferase OS=Leptospira interrogans GN=trpD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 56/160 (35.00%), Postives = 86/160 (53.75%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            LI    LT  EA++ +++++  E  E L+S+FL  +R  GE+  E++G   A+ K A + + +   D +D  GTGGDG  T+NIST ++I+ A+ G KVAK             D+L  LG   +   E V   +   G  F+ +  +HP+MK   PVRK
Sbjct:   10 LIEHKHLTTLEAESFMNHVMKGEVSEILLSSFLTAMRFNGESVEEVLGCTLALRKNALRPKTVFPFDLLDTCGTGGDGQGTINISTLSAIVLASLGIKVAKHGNRSVSSHTGSSDILTRLGYQTETTQEEVEAHLVNRGFTFLFAPMWHPSMKHAGPVRK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_LEPIC (Anthranilate phosphoribosyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=trpD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 56/160 (35.00%), Postives = 86/160 (53.75%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            LI    LT  EA++ +++++  E  E L+S+FL  +R  GE+  E++G   A+ K A + + +   D +D  GTGGDG  T+NIST ++I+ A+ G KVAK             D+L  LG   +   E V   +   G  F+ +  +HP+MK   PVRK
Sbjct:   10 LIEHKHLTALEAESFMNHVMKGEVSEILLSSFLTAMRFNGESVEEVLGCTLALRKNALRPKTVFPFDLLDTCGTGGDGQGTINISTLSAIVLASLGIKVAKHGNRSVSSHTGSSDILTRLGYQTETTQEEVEAHLVNRGFTFLFAPMWHPSMKHAGPVRK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BLOPB (Anthranilate phosphoribosyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=trpD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 51/167 (30.54%), Postives = 94/167 (56.29%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNEADEAL-ISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            +++D L    ++ + +++A L  ++ E   A+ I++ L+ ++ +GETF EI+G    ++ +A           DI GTGGD +NT+NIST ++I+AA CGAK+ K             D+L+   ++++  P+  R+  DE GI F+ + +Y+  +  + P+RK  K
Sbjct:    3 KILDTLYQGKNINQKQSEALLHSIIKEKLSAIQIASALISMKIRGETFEEIIGAVNILLTHAKPFPRPNSLFADITGTGGDNSNTINISTTSAIVAATCGAKIIKHGNRSISSLTGSMDLLKQHCLILN-SPQQARKNFDELGICFLYAPQYYTVLHRIMPIRKQLK 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BACHD (Anthranilate phosphoribosyltransferase OS=Bacillus halodurans GN=trpD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  243 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            L E +A+  +D ++  EA  + I++ L +LR +GET  E+ G ARAM +++ ++E      VD  GTGGD   T NIST  ++L +A G  VAK             DVLEAL + I   PE     + +  + FM +  YH AMK     RK
Sbjct:   15 LAERKAEQVMDAIMKGEATASQIASLLTVLRFRGETVAEMTGFARAMRRHSIQIEHSFSQVVDTCGTGGDDVGTFNISTATALLVSALGVPVAKHGNRAVSSKSGSADVLEALQIPIQSSPEEATASLQKHNMCFMFAPLYHVAMKHAVAPRK 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_ACIF5 (Anthranilate phosphoribosyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=trpD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 57/164 (34.76%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNEA-DEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++++ +++  DL+  E +     ++  A   A I A L+ LR KG+   E+VG  +A+    T+VE   D  +D  GTGGD  +T NIST ++++AAA GA+VAK             DVLEA G+ +D+ P  V   ++  GIGF+ +  +H AM++    RK
Sbjct:    5 DILEQIVAGQDLSRKETETVFAAIMAGAWTPAQIGALLMGLRMKGQRVEELVGATQALRACMTRVEVSTDHLLDTCGTGGDALSTFNISTVSAVVAAAGGARVAKHGNRSMVSRSGSADVLEAAGLRMDMSPAEVADSIERIGIGFLFAPAHHGAMRYAVGPRK 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_ACIF2 (Anthranilate phosphoribosyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=trpD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 57/164 (34.76%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLNEA-DEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++++ +++  DL+  E +     ++  A   A I A L+ LR KG+   E+VG  +A+    T+VE   D  +D  GTGGD  +T NIST ++++AAA GA+VAK             DVLEA G+ +D+ P  V   ++  GIGF+ +  +H AM++    RK
Sbjct:    5 DILEQIVAGQDLSRKETETVFAAIMAGAWTPAQIGALLMGLRMKGQRVEELVGATQALRACMTRVEVSTDHLLDTCGTGGDALSTFNISTVSAVVAAAGGARVAKHGNRSMVSRSGSADVLEAAGLRMDMSPAEVADSIERIGIGFLFAPAHHGAMRYAVGPRK 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_VESOH (Anthranilate phosphoribosyltransferase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=trpD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV--EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + I  ++ + DL++ E Q  + D +  +  +   S FLV L  KGE+  EI  + + +  +   V  +     VD  GTGGDG    NIST  + + AA G  VAK             DVL+A GV +++  E + +C+++ GIGFM +  +H ++K+   VRK
Sbjct:    5 QAIKQIVKKQDLSQNEMQKVMNDIMTGKTTDTQTSGFLVGLAIKGESIDEITAVVKIIRSFTKSVTIKNTKHLVDTCGTGGDGLGLFNISTACAFVVAAAGGSVAKHGNRGISSKSGSADVLKAAGVNLNMSVERISKCIEKIGIGFMFAPFHHHSIKYTTNVRK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PROMH (Anthranilate phosphoribosyltransferase OS=Proteus mirabilis (strain HI4320) GN=trpD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 55/159 (34.59%), Postives = 85/159 (53.46%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAV-DIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            L +   L+  E+Q     ++  E  E+ ++A L+ ++ +GE   EI G ARA++  A+          DIVGTGGDGAN++NIST ++ +AA  G KVAK             D+L A G+ +D      R+ +DE G+ F+ +  YH   +F  PVR+
Sbjct:    8 LFAGQQLSLEESQTLFSAIIRGELTESQLAAVLISMKMRGEHPQEIAGAARALLDNASPFPRPDYLFCDIVGTGGDGANSINISTASAFVAAEIGLKVAKHGNRSVSSRSGSSDLLAAFGIPLDKSANDARQLLDEIGLCFLFAPLYHSGFRFAAPVRQ 166          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_OCHA42.543e-1834.44Anthranilate phosphoribosyltransferase OS=Ochrobac... [more]
TRPD_HELPH2.543e-1831.71Anthranilate phosphoribosyltransferase OS=Helicoba... [more]
TRPD_LEPIN3.322e-1835.00Anthranilate phosphoribosyltransferase OS=Leptospi... [more]
TRPD_LEPIC3.322e-1835.00Anthranilate phosphoribosyltransferase OS=Leptospi... [more]
TRPD_BLOPB3.322e-1830.54Anthranilate phosphoribosyltransferase OS=Blochman... [more]
TRPD_BACHD3.322e-1836.60Anthranilate phosphoribosyltransferase OS=Bacillus... [more]
TRPD_ACIF53.322e-1834.76Anthranilate phosphoribosyltransferase OS=Acidithi... [more]
TRPD_ACIF23.322e-1834.76Anthranilate phosphoribosyltransferase OS=Acidithi... [more]
TRPD_VESOH4.338e-1832.12Anthranilate phosphoribosyltransferase OS=Vesicomy... [more]
TRPD_PROMH4.338e-1834.59Anthranilate phosphoribosyltransferase OS=Proteus ... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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