FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9351 contig Ccv1_Contig9351:11..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_THISH (Anthranilate phosphoribosyltransferase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 674
            + I  +  R+DL+E E  A +  ++N EA  A +  FLV L  KGET  E+   AR M   AT+VE   G  VD  GTGGD + + NIST ++++ AA G +VAK             DVLEA GV +DL PE V RC+++ G+GF+ + K+H AMK
Sbjct:    5 QAIRAVTQRIDLSEQEMTAVMGLIMNGEATPAQMGGFLVGLAMKGETVDEVTAAARVMRDLATRVEVQAGHLVDTCGTGGDASGSFNISTASALVVAAAGGRVAKHGNRSVSSKSGSADVLEAAGVNLDLSPEQVARCIEQVGVGFLFAPKHHGAMK 161          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_SALTO (Anthranilate phosphoribosyltransferase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 73/166 (43.98%), Postives = 95/166 (57.23%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAE-AQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV----EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            L+  L+   +L  A+ A A  + +   A  A I+ F V LRAKGET  E+ GL  AM+ +A  V    E    AVD+VGTGGD A+TVNIST AS++ A  G +V K             DVLE LG+ +DL PE V  CV EAGIGF  + ++HP M+   PVR+
Sbjct:    9 LLAALLRGDELCTADTAWAMGEIMSGSAGPAQIAGFAVALRAKGETPTELAGLVEAMLTHAVPVNLPAELRATAVDVVGTGGDLAHTVNISTMASLVVAGAGVRVVKHGNRAASSSCGTADVLEFLGLPLDLGPEAVATCVAEAGIGFCFAARFHPGMRHAGPVRR 174          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RALPJ (Anthranilate phosphoribosyltransferase OS=Ralstonia pickettii (strain 12J) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 68/140 (48.57%), Postives = 84/140 (60.00%), Query Frame = 3
Query:  288 EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA----VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E    + +A  + LR K ET GEI   A  M ++ATKV+   +     VDIVGTGGDGANT NIST +  +AAA GA++AK             DVLEALGV I L PE V   ++ AGIGFM +  +HPAMK V P+RK
Sbjct:   34 EMSPVMAAALTMGLRVKKETIGEIAAAATVMREFATKVDVPAEVSDHFVDIVGTGGDGANTFNISTASMFVAAAAGARIAKHGGRGVSSKSGSADVLEALGVNIMLTPEQVAESIETAGIGFMFAPNHHPAMKNVAPIRK 173          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_METSB (Anthranilate phosphoribosyltransferase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 68/161 (42.24%), Postives = 91/161 (56.52%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            L+  L +   LT+AEA  + D +    A  A + AFL+ LR +GET  EIVG   AM     +V+   DA+DIVGTGGDG +T N+ST A+++ +ACG  VAK             DVL ALGV I LD   V  C++ AG+ FM +  +H AM+ V   R
Sbjct:    7 LLGKLATGASLTQAEATRAFDLIFEGAATPAQLGAFLMALRVRGETIDEIVGAVAAMRARMLRVDAPADAMDIVGTGGDGHSTYNVSTLAALIVSACGVPVAKHGNRAASSQSGASDVLSALGVKIGLDSREVEACLEAAGVAFMSAQAHHAAMRHVAAAR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_BRAJA (Anthranilate phosphoribosyltransferase OS=Bradyrhizobium japonicum GN=trpD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +I  + +   L+  EA ++ D +++ EA  + +   L+ LR +GET  EI G   AM      V    DAVDIVGTGGDG+ +VN+ST AS + +  G  VAK             DVL +LGV IDL PE V RCV E GIGFM +  +HPAMK V P R
Sbjct:    7 IIGKVATGASLSRDEAASAFDAMMSGEATPSQMGGLLMALRVRGETVDEITGAVAAMRSKMLTVTAPPDAVDIVGTGGDGSGSVNVSTCASFIVSGAGVPVAKHGNRALSSRSGAADVLASLGVRIDLRPEQVGRCVRECGIGFMFAPAHHPAMKNVGPTR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_AGRRK (Anthranilate phosphoribosyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 68/155 (43.87%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  231 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            +R  LT  EA+ + D L++ EA  + I AFL+ LR +GET  EIVG   AM      VE   DA+DIVGTGGDG  T NIST A+ + A  G  VAK             D    LG+ +D+ PE + RC+ EAGIGFM +  +H +M+ V P R
Sbjct:   13 NREVLTRDEARQAFDILMSGEATPSQIGAFLMALRVRGETVDEIVGAVTAMRAKMLPVEAPADAIDIVGTGGDGFGTYNISTLAAFIVAGAGVPVAKHGNRAQSSKAGTADTQSVLGIKLDIGPEVIARCIREAGIGFMFAQLHHSSMRHVGPSR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RHORT (Anthranilate phosphoribosyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=trpD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 67/151 (44.37%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  243 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            L+EA+A  + + +++  A  A I  FL+ LR +GET  EI   AR M   A +++    A+DIVGTGGD A T NIST A+++ AACG  VAK             DVL ALGV +D D   V R + E GIGFM + ++H AMK V P R
Sbjct:   24 LSEADATRAFEAIMSGNATPAQIGGFLMALRVRGETVAEITAAARTMRDKAARIQAPAGAIDIVGTGGDCAGTYNISTAAALVTAACGVPVAKHGNRAASSKSGSADVLAALGVNLDADLALVERSIAEVGIGFMFAQRHHSAMKHVAPAR 174          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RALEH (Anthranilate phosphoribosyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=trpD PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 67/133 (50.38%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A L  LR K ET GEI   A+ M ++A KV      + VDIVGTGGDG++T NIST +  +AAA GAK+AK             DVLEALGV I L PE V +C++E GIGFM +  +HPAMK V P+RK
Sbjct:   38 MAAAILTGLRVKKETIGEISAAAQVMREFANKVPVADRENFVDIVGTGGDGSHTFNISTASMFVAAAAGAKIAKHGNRGVSSKSGSADVLEALGVNIMLTPEQVGQCIEETGIGFMFAPTHHPAMKNVAPIRK 170          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_NOCFA (Anthranilate phosphoribosyltransferase OS=Nocardia farcinica GN=trpD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++  L    DL+ A+   +++ ++++ A  A I+AF V ++ KG T  E+ GLA  M ++A  V   GDAVDIVGTGGD + +VNIST +SI+ AA G  V K             DVLEALGV ++L PE V RCV E GIGF  +  +HPA++F    R+
Sbjct:    1 MLGALADGRDLSAADTAWAMNEIMSDNATSAQIAAFGVAIKIKGPTPEELGGLATGMFEHARLVSIDGDAVDIVGTGGDRSGSVNISTMSSIVVAAAGVPVVKHGNRAASSKSGGADVLEALGVRLNLGPEAVARCVREVGIGFCFAPVFHPALRFAGAARR 162          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RHIEC (Anthranilate phosphoribosyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  231 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            SR  LT  EA+A+ D L++ +A  + I  FL+ LR +GE+  EIVG    M      VE   DA+DIVGTGGD + T NIST A+++ A  G  VAK             D L ALGV ID+ PE + RC+ EA +GFM +  +H AM+ V P R
Sbjct:   13 SREPLTRDEARAAFDILMSGQATPSQIGGFLMALRVRGESVDEIVGAVTTMRSKMLTVEAPADAIDIVGTGGDASGTYNISTLAALIVAGAGVPVAKHGNRALSSKSGAADNLSALGVNIDVGPEIISRCIAEASVGFMFAQLHHSAMRHVGPSR 167          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_THISH1.488e-2642.68Anthranilate phosphoribosyltransferase OS=Thioalka... [more]
TRPD_SALTO1.488e-2643.98Anthranilate phosphoribosyltransferase OS=Salinisp... [more]
TRPD_RALPJ1.943e-2648.57Anthranilate phosphoribosyltransferase OS=Ralstoni... [more]
TRPD_METSB1.943e-2642.24Anthranilate phosphoribosyltransferase OS=Methyloc... [more]
TRPD_BRAJA1.943e-2643.48Anthranilate phosphoribosyltransferase OS=Bradyrhi... [more]
TRPD_AGRRK1.943e-2643.87Anthranilate phosphoribosyltransferase OS=Agrobact... [more]
TRPD_RHORT2.537e-2644.37Anthranilate phosphoribosyltransferase OS=Rhodospi... [more]
TRPD_RALEH2.537e-2650.38Anthranilate phosphoribosyltransferase OS=Ralstoni... [more]
TRPD_NOCFA2.537e-2642.59Anthranilate phosphoribosyltransferase OS=Nocardia... [more]
TRPD_RHIEC3.314e-2643.87Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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