FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9351 contig Ccv1_Contig9351:11..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RHIE6 (Anthranilate phosphoribosyltransferase OS=Rhizobium etli (strain CIAT 652) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  231 SRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            SR  LT  EA+A+ D L++ +A  + I  FL+ LR +GE+  EIVG    M      VE   DA+DIVGTGGD + T NIST A+++ A  G  VAK             D L ALGV ID+ PE + RC+ EA +GFM +  +H AM+ V P R
Sbjct:   13 SREPLTRDEARAAFDILMSGQATPSQIGGFLMALRVRGESVDEIVGAVTTMRSKMLTVEAPADAIDIVGTGGDASGTYNISTLAALIVAGAGVPVAKHGNRALSSKSGAADNLSALGVNIDVGPEIISRCIAEASVGFMFAQLHHSAMRHVGPSR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RALEJ (Anthranilate phosphoribosyltransferase OS=Ralstonia eutropha (strain JMP134) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 67/133 (50.38%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A L  LR K ET GEI   A+ M ++A KVE     + VDIVGTGGDG++T NIST +  +AAA GAK+AK             DVLEALGV I L PE V +C+ + GIGFM +  +HPAMK V P+RK
Sbjct:   66 MAAAILTGLRVKKETIGEISAAAQVMREFANKVEVTDRENFVDIVGTGGDGSHTFNISTASMFVAAAAGAKIAKHGNRGVSSKSGSADVLEALGVNIMLTPEQVGQCIAQTGIGFMFAPTHHPAMKNVAPIRK 198          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD1_RALSO (Anthranilate phosphoribosyltransferase 1 OS=Ralstonia solanacearum GN=trpD1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 68/140 (48.57%), Postives = 84/140 (60.00%), Query Frame = 3
Query:  288 EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEG----LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E    + SA ++ LR K ET GEI   A  M ++AT V+     L   VDIVGTGGDGANT NIST +  +AAA GA++AK             DVLEALGV I L PE V + ++  GIGFM +  +HPAMK V P+RK
Sbjct:   34 EMSPVIASALIMGLRVKKETIGEIAAAATVMREFATTVDVPAAILDHFVDIVGTGGDGANTFNISTASMFVAAAAGARIAKHGGRGVSSKSGSADVLEALGVNIMLTPEQVAQSIEAVGIGFMFAPNHHPAMKNVAPIRK 173          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_THICR (Anthranilate phosphoribosyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 74/166 (44.58%), Postives = 98/166 (59.04%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA---VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + ++ L+++ DLT  + +  +  L++ +A  A I+A LV LRAKGET  EI   A  M   AT+V  L D    VD  GTGGDGANT NIST ++ +AAA GAKVAK             D+LE  GV ++L PE V  CV+  G+GFM +  +H AMK V  VRK
Sbjct:    5 DALEQLLNKHDLTAEQMEWVMQMLMSGQATSAQIAAILVALRAKGETVEEITAAASVMRSLATQVT-LTDKTHMVDTCGTGGDGANTFNISTASAFVAAAAGAKVAKHGSRSVSSQSGSADLLEKAGVNLNLTPEQVAECVETVGVGFMYAPAHHSAMKHVIGVRK 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_OLICO (Anthranilate phosphoribosyltransferase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 67/165 (40.61%), Postives = 93/165 (56.36%), Query Frame = 3
Query:  204 FNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            F  ++  L     L+  EA A+ D+L++ EA  + I   L+ +R +GET  EI G    M     +V    DAVD+VGTGGDG+ +VN+ST A+ + A  G  VAK             DVL +LGV I+L PE V  C+ +AGIGFM +  +HPA++ V P RK
Sbjct:    4 FKAILAKLADGKSLSRDEAVAAFDHLMSGEATPSQIGGALMAMRVRGETVDEITGAVSTMRAKMLRVTAPDDAVDVVGTGGDGSGSVNVSTCAAFIVAGAGVPVAKHGNRAMSSKSGAADVLASLGVNIELTPEQVGACIAKAGIGFMFAPAHHPAIRHVGPTRK 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_CLOAB (Anthranilate phosphoribosyltransferase OS=Clostridium acetobutylicum GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 71/154 (46.10%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  243 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKS 698
            L+E EA  +++ +++ +  E  ++AFL  LR KGE   EI+G ARAM ++A KVE     A+D  GTGGDG  T N+ST +SI+AAA G K+AK             DVL  LGV I+L PE V+R ++E G+ F+ +  YH AMK V PVRKS
Sbjct:   15 LSENEAYGAMNEIMDGKVSEIDMAAFLTGLRMKGEEVEEILGCARAMKEHAVKVEVNNLYAIDTCGTGGDGGKTFNVSTCSSIIAAAGGVKIAKHGNRAGSSKSGSADVLTELGVSINLKPEEVKREIEEKGMAFIFAQSYHKAMKNVAPVRKS 168          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_CARHZ (Anthranilate phosphoribosyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=trpD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 74/167 (44.31%), Postives = 98/167 (58.68%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYA----TKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E+++ L+   +L  +EA A+++ L+  +  EA ++AFLV L+ KGET  EI   A A+ + A    T+ EGL   VD  GTGGDG  T NIST A+ + A  G  VAK             DVLEALGV IDLD +G  RCVDE GIGF+ +   HPAM+ V   R+
Sbjct:    4 EVLERLMRGENLNFSEALATMNELMEGKYTEAQVAAFLVALKMKGETEEEISAFALALREKARRVITQTEGL---VDTCGTGGDGRQTFNISTAAAFVVAGAGIPVAKHGNRSVSSRSGSADVLEALGVNIDLDAKGTARCVDEIGIGFLFAPNLHPAMRHVAKTRR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD2_RALSO (Anthranilate phosphoribosyltransferase 2 OS=Ralstonia solanacearum GN=trpD2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/134 (48.51%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  291 ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            A  A + A L+ LR +GET  EIVG A AM      V+   DAVDIVGTGGD A T NIST A+ + A  G  VAK             DVL ALGV +D  P  + RC+ EAGIGFM +  +HPA+K + PVR
Sbjct:   34 ASHAQLGALLMALRVRGETVEEIVGAALAMRARMVPVKAPADAVDIVGTGGDNAGTYNISTCAAFIVAGAGVPVAKHGNRALSSKSGAADVLSALGVNLDQTPADIERCIAEAGIGFMFAPTHHPALKQLMPVR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_THEPX (Anthranilate phosphoribosyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E I  ++S+ +L E EA A ++ +++  A  +LI   L+ LR KGE+  EI G A+AM   A K+E   D  +D  GTGGDG  T NIST  +I+A+A G KVAK             DVL  LG  I++ PE  +R ++E G+GF+ + KYH AMK V  +RK
Sbjct:    4 EAIKKIVSKENLEEREAYAVMNEIMSGNATPSLIGGILIGLRLKGESVEEITGFAKAMRDNAIKLELASDYVIDTCGTGGDGGKTFNISTAVAIIASAAGVKVAKHGNRAVSSKSGSADVLMELGFDIEMVPEKTKRLIEEKGMGFLFAPKYHVAMKNVAGIRK 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_THEP3 (Anthranilate phosphoribosyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            E I  ++S+ +L E EA A ++ +++  A  +LI   L+ LR KGE+  EI G A+AM   A K+E   D  +D  GTGGDG  T NIST  +I+A+A G KVAK             DVL  LG  I++ PE  +R ++E G+GF+ + KYH AMK V  +RK
Sbjct:    4 EAIKKIVSKENLEEREAYAVMNEIMSGNATPSLIGGILIGLRLKGESVEEITGFAKAMRDNAIKLELASDYVIDTCGTGGDGGKTFNISTAVAIIASAAGVKVAKHGNRAVSSKSGSADVLMELGFDIEMVPEKTKRLIEEKGMGFLFAPKYHVAMKNVAGIRK 167          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_RHIE63.314e-2643.87Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_RALEJ3.314e-2650.38Anthranilate phosphoribosyltransferase OS=Ralstoni... [more]
TRPD1_RALSO3.314e-2648.57Anthranilate phosphoribosyltransferase 1 OS=Ralsto... [more]
TRPD_THICR4.328e-2644.58Anthranilate phosphoribosyltransferase OS=Thiomicr... [more]
TRPD_OLICO4.328e-2640.61Anthranilate phosphoribosyltransferase OS=Oligotro... [more]
TRPD_CLOAB4.328e-2646.10Anthranilate phosphoribosyltransferase OS=Clostrid... [more]
TRPD_CARHZ4.328e-2644.31Anthranilate phosphoribosyltransferase OS=Carboxyd... [more]
TRPD2_RALSO5.653e-2648.51Anthranilate phosphoribosyltransferase 2 OS=Ralsto... [more]
TRPD_THEPX9.642e-2642.07Anthranilate phosphoribosyltransferase OS=Thermoan... [more]
TRPD_THEP39.642e-2642.07Anthranilate phosphoribosyltransferase OS=Thermoan... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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