FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9351 contig Ccv1_Contig9351:11..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_POLSQ (Anthranilate phosphoribosyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 64/133 (48.12%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKV--EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            L++  LV LR K ET GEI   A+ M ++AT V  +     VD+VGTGGDGA+T NIST A  +AAA GAK+AK             DVLEALG  + L  E V +C+   G GFM +  +HPAMK V P+RK
Sbjct:   39 LVAGLLVALRTKKETVGEIAAAAQVMREFATSVHIDDRSHLVDVVGTGGDGAHTFNISTAAMFVAAAAGAKIAKHGNRSVSSKSGSADVLEALGANLALSAEQVAKCISTVGAGFMFAPNHHPAMKNVVPIRK 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_POLNS (Anthranilate phosphoribosyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 70/171 (40.94%), Postives = 96/171 (56.14%), Query Frame = 3
Query:  192 LTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAT--KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +TP   E +   I   +L   E  A +  +++ E    L++  L+ LR K ET GEI   A+ M ++AT  +V+     VD+VGTGGDGA+T NIST A  +AA  GAK+AK             DVLEALGV + L  + V +C+   G GFM +  +HPAMK V P+RK
Sbjct:    3 ITP--QEALQRCIEHRELFHDEMTAMMRLIMSGEMSPELVAGLLIALRTKKETVGEIAAAAQVMREFATSVQVDDRTHLVDVVGTGGDGAHTFNISTAAMFVAAGTGAKIAKHGNRSVSSKSGSADVLEALGVNLALSADQVAKCISTVGTGFMFAPNHHPAMKNVVPIRK 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PHOPR (Anthranilate phosphoribosyltransferase OS=Photobacterium profundum GN=trpD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = 3
Query:  210 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            E+ D L ++  LT+ E+    D ++  + D  L+SA L  L+ KGET  EI G A A++  A        D  DIVGTGGDGANT+NIST A+ +AAACG KVAK             D+L+  G+ + + PE  R  +DE G+ F+ + +YH  ++   PVR++ K
Sbjct:   10 EIADKLYAQQALTQDESHVLFDAIIKGDVDPILLSAVLTALKIKGETPAEIAGAASALLANANAFPSPEYDFADIVGTGGDGANTINISTTAAFVAAACGVKVAKHGNRGVSSKSGSSDLLDKFGINLAMTPENARGALDELGVCFLFAPEYHSGVRHAMPVRQTLK 176          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_METNO (Anthranilate phosphoribosyltransferase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  243 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            LT  EA+ + D+LL+ E   A   AFL+ LR +GE   EIVG A A+ +   +V     A+DIVGTGGD + + N+ST A+I+ A+CG  VAK             DVL ALGV + LDPE + +C+ +AG+ FM +  +H +M+ V PVR
Sbjct:   17 LTREEARTAFDHLLSGEVTHAQAGAFLMALRVRGEAADEIVGAAGALRERMVRVAAPPGAIDIVGTGGDHSGSYNVSTLAAIITASCGVPVAKHGNRAASSRSGAADVLAALGVRLGLDPEALAQCLAQAGLCFMFAQTHHASMRHVAPVR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_METKA (Anthranilate phosphoribosyltransferase OS=Methanopyrus kandleri GN=trpD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 67/163 (41.10%), Postives = 95/163 (58.28%), Query Frame = 3
Query:  213 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +++ +I   DL   EA+  +  ++  E  +  ++  LV LR KG T  E+VG    M+++A KV+  +   VD  GTGGD  +T N ST A + AAA G  VAK             D+LEALGV I+ DP+ V+RC++E G GFM + K+HPAMK V PVR+
Sbjct:    3 VLERIIRGSDLDREEARDLMCRIVGGELSDVEVAGILVALRCKGYTSEELVGFVDGMMEHAVKVDPDVERLVDTAGTGGDELDTFNASTLAGLTAAAAGVPVAKHGNRSVTSECGSADILEALGVNIEADPDTVKRCIEEVGFGFMFAPKFHPAMKNVMPVRR 165          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_GEOMG (Anthranilate phosphoribosyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 72/173 (41.62%), Postives = 95/173 (54.91%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV---EGLGDA------------VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++ R+DLTEAE    +D +++ EA  A I++F+  LR KGET  EI G AR M   AT +   +G+ D             +D+VGTGGDG NT NIST  S + A+CG KVAK             DVLE+LGV +D+ PE V   +   GIGF+ +   H AMK     RK
Sbjct:    9 VVERIDLTEAEMIEVMDQIMSGEATPAQIASFITALRMKGETVEEITGAARVMRDRATPIRVGKGVLDIDRDDINIDQETILDVVGTGGDGTNTFNISTTVSFVVASCGVKVAKHGNRAVSSACGSADVLESLGVSLDVTPETVENAIARIGIGFLFAPALHGAMKHAIGPRK 181          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_AGRVS (Anthranilate phosphoribosyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=trpD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 66/151 (43.71%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  243 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVR 692
            LT  EA  + + L++ EA  A I  FL+ LR +GET  EIVG    M +    V    D++DIVGTGGDG  T NIST A+++ A  G  VAK             D L ALGV +D+DP  + RC+ EAG+GFM +  +H AM+ V P R
Sbjct:   17 LTRDEAADAFNILMSGEATPAQIGGFLIALRMRGETVPEIVGAVTVMRQKMLPVIAPTDSIDIVGTGGDGTGTYNISTLAALIVAGAGVPVAKHGNKALSSKSGAADSLTALGVKLDIDPSVIGRCISEAGVGFMFAQLHHSAMRHVGPAR 167          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEAE (Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa GN=trpD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 65/160 (40.62%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +++++DLT  E QA +  ++  +  +A I AFL+ +R K ET  EIVG    M + A  V+   L   VD+VGTGGDGAN  N+S+ AS + AA G KVAK             D+LEA G+ ++L  E V RC+D  G+GFM +  +H AMK+    R+
Sbjct:   10 IVNQLDLTTEEMQAVMRQIMTGQCTDAQIGAFLMGMRMKSETIDEIVGAVAVMRELADGVQLPTLKHVVDVVGTGGDGANIFNVSSAASFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGIYLELTSEQVARCIDTVGVGFMFAQVHHKAMKYAAGPRR 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEAB (Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 65/160 (40.62%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +++++DLT  E QA +  ++  +  +A I AFL+ +R K ET  EIVG    M + A  V+   L   VD+VGTGGDGAN  N+S+ AS + AA G KVAK             D+LEA G+ ++L  E V RC+D  G+GFM +  +H AMK+    R+
Sbjct:   10 IVNQLDLTTEEMQAVMRQIMTGQCTDAQIGAFLMGMRMKSETIDEIVGAVAVMRELADGVQLPTLKHVVDVVGTGGDGANIFNVSSAASFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGIYLELTSEQVARCIDTVGVGFMFAQVHHKAMKYAAGPRR 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEA8 (Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 65/160 (40.62%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +++++DLT  E QA +  ++  +  +A I AFL+ +R K ET  EIVG    M + A  V+   L   VD+VGTGGDGAN  N+S+ AS + AA G KVAK             D+LEA G+ ++L  E V RC+D  G+GFM +  +H AMK+    R+
Sbjct:   10 IVNQLDLTTEEMQAVMRQIMTGQCTDAQIGAFLMGMRMKSETIDEIVGAVAVMRELADGVQLPTLKHVVDVVGTGGDGANIFNVSSAASFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGIYLELTSEQVARCIDTVGVGFMFAQVHHKAMKYAAGPRR 169          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_POLSQ9.642e-2648.12Anthranilate phosphoribosyltransferase OS=Polynucl... [more]
TRPD_POLNS9.642e-2640.94Anthranilate phosphoribosyltransferase OS=Polynucl... [more]
TRPD_PHOPR9.642e-2639.52Anthranilate phosphoribosyltransferase OS=Photobac... [more]
TRPD_METNO9.642e-2643.05Anthranilate phosphoribosyltransferase OS=Methylob... [more]
TRPD_METKA9.642e-2641.10Anthranilate phosphoribosyltransferase OS=Methanop... [more]
TRPD_GEOMG9.642e-2641.62Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_AGRVS9.642e-2643.71Anthranilate phosphoribosyltransferase OS=Agrobact... [more]
TRPD_PSEAE1.259e-2540.63Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEAB1.259e-2540.63Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEA81.259e-2540.63Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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