FC875438

Overview
NameFC875438
Unique NameFC875438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9351 contig Ccv1_Contig9351:11..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PELPD (Anthranilate phosphoribosyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDI---------------VGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKF 677
            ++ + DLTE E    +  ++  EA  A I AF+  LR KGET  EI G AR M ++AT++    D +DI               VGTGGDG NT N+ST  + + +ACG KVAK             DVLE LGV +D+ PE V +C+ + GIGF+ +   H AM++
Sbjct:    9 IVEQKDLTEGEMIEVMGQIMTGEATPAQIGAFITALRMKGETIDEITGAARVMREHATRIRAGKDLLDIDRDDINIDRETILDVVGTGGDGTNTFNVSTTVAFVVSACGVKVAKHGNRSVSSLCGSADVLEKLGVNLDITPETVEQCITKIGIGFLFAPALHGAMRY 175          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSE14 (Anthranilate phosphoribosyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +++++DLT  E +  + + +  +  EA I AFL+ +R K ET  EIVG    M + A+ VE   L   VDIVGTGGDGAN  N+ST ++ + AA G KVAK             D+LEA GV ++L P  V RC+D  GIGFM +  +H AMK     R+
Sbjct:   10 VVNQLDLTTDEMRDVMREIMTGQCTEAQIGAFLMGMRMKSETIDEIVGAVSVMRELASSVELKTLDGVVDIVGTGGDGANIFNVSTASAFVIAAAGCKVAKHGNRAVSGKSGSADLLEAAGVYLNLTPVQVARCIDSVGIGFMFAQSHHTAMKHTAGPRR 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_MYCVP (Anthranilate phosphoribosyltransferase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 73/183 (39.89%), Postives = 103/183 (56.28%), Query Frame = 3
Query:  159 PQPAVSDNTRPLTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV--EGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            PQ A + N    TP +  ++  L +   L   +   ++D ++   A  A I+AF V ++ K  T  E+  LA  M+K+A +V  + +G A VDIVGTGGDGANTVN+ST A+I+ AA G  V K             D LEALG+ IDL P+ V RCV E GIGF  + ++HP+ +    VR+
Sbjct:    6 PQLASAQNPSGDTPTWAMILGRLTTGQGLAPGQTAWAMDQIMTGTATPAQIAAFAVSMKMKRPTSAEVTELADIMLKHARRVPTDVIGTATVDIVGTGGDGANTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGLRIDLGPDEVARCVAEVGIGFAFAPQFHPSYRHAGAVRR 188          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_XANC5 (Anthranilate phosphoribosyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 72/172 (41.86%), Postives = 95/172 (55.23%), Query Frame = 3
Query:  189 PLTPCFNELIDCLISRVDLTEAE-AQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            P+TP   E +   I   ++   E  +     +  E  + +++A L  LR K ET GEI G A  M +++ +V+       VDIVGTGGDG++T NIST A  +AAA GAKVAK             D LEALG VI+L PE V   +   GIGFM +  +HPAMK V PVR+
Sbjct:    2 PITP--QEALQRTIEHREIFHDEMVELMRQVMRGEVSDMMVAAILTGLRVKKETIGEIAGAATVMREFSRRVDVADRQHMVDIVGTGGDGSDTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVASALAHTGIGFMYAPVHHPAMKVVAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_XANAC (Anthranilate phosphoribosyltransferase OS=Xanthomonas axonopodis pv. citri GN=trpD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 72/172 (41.86%), Postives = 96/172 (55.81%), Query Frame = 3
Query:  189 PLTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            P+TP   E +   I   ++   E    +  ++  E  + +++A L  LR K ET GEI G A  M +++ +V+       VDIVGTGGDG++T NIST A  +AAA GAKVAK             D LEALG VI+L PE V   +   GIGFM +  +HPAMK V PVR+
Sbjct:    2 PITP--QEALQRTIEHREIFHDEMVELMRQIMRGEVSDMMVAAILTGLRVKKETIGEIAGAATVMREFSRRVDVADRQHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVASALAHTGIGFMYAPVHHPAMKVVAPVRR 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_VIBHB (Anthranilate phosphoribosyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 65/168 (38.69%), Postives = 96/168 (57.14%), Query Frame = 3
Query:  207 NELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKSSK 704
            N +I  L  +  LT+ E+Q   D ++  E D  L+++ L  L+ KGET  EI G A+A++  A        D  DIVGTGGDG NT+NIST A+ +AAACG KVAK             D+L++ G+ + +  E  R+ VDE G+ F+ + +YH  ++   PVR++ K
Sbjct:    6 NPIITKLYEQESLTQEESQQLFDIIIRGELDPILMASALTALKIKGETPDEIAGAAKALLANANPFPRPDYDFADIVGTGGDGHNTINISTTAAFVAAACGLKVAKHGNRSVSSKSGSSDLLDSFGINLAMSAEDTRKAVDEIGVAFLFAPQYHGGVRHAMPVRQTMK 173          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_RALME (Anthranilate phosphoribosyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=trpD PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  303 LISAFLVLLRAKGETFGEIVGLARAMIKYATKV--EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            + +A L  LR K ET GEI   A+ M ++A  V  +   + VDIVGTGGDG++T NIST +  +AAA GAK+AK             DVLEALGV I L PE V  C+++ GIGFM +  +HPAMK V P+RK
Sbjct:   39 MAAAILTGLRVKKETIGEISAAAQVMREFANHVTVKDRENFVDIVGTGGDGSHTFNISTASMFVAAAAGAKIAKHGNRGVSSKSGSADVLEALGVNIMLTPEQVGECIEQTGIGFMFAPTHHPAMKNVAPIRK 171          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEPK (Anthranilate phosphoribosyltransferase OS=Pseudomonas putida (strain KT2440) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 66/160 (41.25%), Postives = 90/160 (56.25%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++ ++DLT  E +  +  ++  +  EA I AFL+ +R K E+  EIVG    M + A KVE   L   VDIVGTGGDGAN  N+ST +S + AA G  VAK             D+LEA G+ ++L P  V RC+D  GIGFM +  +H AMK     R+
Sbjct:   10 IVGQLDLTTEEMREVMRQIMTGQCSEAQIGAFLMGMRMKSESIDEIVGAVSVMRELAEKVELQSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGCPVAKHGNRAVSGKSGSADLLEAAGIYLNLTPTQVARCIDSLGIGFMFAQSHHSAMKHAAGPRR 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEP1 (Anthranilate phosphoribosyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 66/160 (41.25%), Postives = 90/160 (56.25%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            ++ ++DLT  E +  +  ++  +  EA I AFL+ +R K E+  EIVG    M + A KVE   L   VDIVGTGGDGAN  N+ST +S + AA G  VAK             D+LEA G+ ++L P  V RC+D  GIGFM +  +H AMK     R+
Sbjct:   10 IVGQLDLTTEEMREVMRQIMTGQCSEAQIGAFLMGMRMKSESIDEIVGAVSVMRELAEKVELQSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGCPVAKHGNRAVSGKSGSADLLEAAGIYLNLTPTQVARCIDSLGIGFMFAQSHHSAMKHAAGPRR 169          
BLAST of FC875438 vs. ExPASy Swiss-Prot
Match: TRPD_PSEA7 (Anthranilate phosphoribosyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=trpD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 65/160 (40.62%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  225 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRK 695
            +++++DLT  E QA +  ++     +A I AFL+ +R K ET  EIVG    M + A  V+   L   VD+VGTGGDGAN  N+S+ AS + AA G KVAK             D+LEA G+ ++L  E V RC+D  G+GFM +  +H AMK+    R+
Sbjct:   10 IVNQLDLTTEEMQAVMRQIMTGRCTDAQIGAFLMGMRMKSETIDEIVGAVAVMRELADGVQLPTLKHVVDVVGTGGDGANIFNVSSAASFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGIYLELTSEQVARCIDTVGVGFMFAQVHHKAMKYAAGPRR 169          
The following BLAST results are available for this feature:
BLAST of FC875438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_PELPD1.259e-2539.52Anthranilate phosphoribosyltransferase OS=Pelobact... [more]
TRPD_PSE141.645e-2541.88Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_MYCVP1.645e-2539.89Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_XANC52.148e-2541.86Anthranilate phosphoribosyltransferase OS=Xanthomo... [more]
TRPD_XANAC2.148e-2541.86Anthranilate phosphoribosyltransferase OS=Xanthomo... [more]
TRPD_VIBHB2.148e-2538.69Anthranilate phosphoribosyltransferase OS=Vibrio h... [more]
TRPD_RALME2.148e-2548.87Anthranilate phosphoribosyltransferase OS=Ralstoni... [more]
TRPD_PSEPK2.148e-2541.25Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEP12.148e-2541.25Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEA72.148e-2540.63Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]

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Properties
Property NameValue
Genbank descriptionC31403H10EF CTVClemen1 Citrus clementina cDNA clone C31403H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875438 ID=FC875438; Name=FC875438; organism=Citrus clementina; type=EST; length=721bp
GGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTT
AATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAAACTG
TGGATTTACGACTGCGGGTACTAATCCGAGATGCAGAGAATTAACTGCTA
TTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAACGCCC
TGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGA
GGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGATGAGG
CCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTT
GGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCTACGAAGGT
GGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTG
CAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGT
GGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGG
AAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAG
AGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCG
ACNAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAGTGAGGAAAAGCTC
AAAGTAAAACTGTATTCATAT
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