FC875439

Overview
NameFC875439
Unique NameFC875439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3341 contig Ccv1_Contig3341:648..1402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875439 vs. ExPASy Swiss-Prot
Match: DGKQ_MOUSE (Diacylglycerol kinase theta OS=Mus musculus GN=Dgkq PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 54/163 (33.13%), Postives = 77/163 (47.24%), Query Frame = 3
Query:   93 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCTLDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIY 581
            R++V GGDGTVGWVL ++ E  +    P P VAI+PLGTGNDL R   WG  +      +V  ++  A A     +D W  ++           H +  TE+        +E   P+ V        NY  IG+DA+++  FH  R E+P        NK +Y
Sbjct:  632 RVLVCGGDGTVGWVLAALEETRRHLACPEPSVAILPLGTGNDLGRVLRWGAGYSGEDPFSVLVSVDEADA---VLMDRWTILLD---------AHEIDSTENNV------VETEPPKIVQ-----MNNYCGIGIDAELSLDFHQAREEEPGKFTSRFHNKGVY 771          
BLAST of FC875439 vs. ExPASy Swiss-Prot
Match: DGKB_RAT (Diacylglycerol kinase beta OS=Rattus norvegicus GN=Dgkb PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 55/177 (31.07%), Postives = 79/177 (44.63%), Query Frame = 3
Query:   93 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSW-HAVIQMPSGEVVDP-PHSLKPTEDCTLDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLT 617
            R++  GGDGTVGW+L  + + N       PPVAI+PLGTGNDL+R   WGG +       + + L+   +     LD W   V      E  DP P+S                            +  NYFSIG+DA +A+ FH +R + P      + NK  Y  +  ++ +  T
Sbjct:  487 RVLACGGDGTVGWILDCIEKANVVKH---PPVAILPLGTGNDLARCLRWGGGYE---GENLMKILKDIESSTEIMLDRWKFEVTPNDKDEKGDPVPYS----------------------------IINNYFSIGVDASIAHRFHIMREKHPEKFNSRMKNKFWYFEFGTSETFSAT 629          
BLAST of FC875439 vs. ExPASy Swiss-Prot
Match: DGKB_MOUSE (Diacylglycerol kinase beta OS=Mus musculus GN=Dgkb PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 55/177 (31.07%), Postives = 79/177 (44.63%), Query Frame = 3
Query:   93 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSW-HAVIQMPSGEVVDP-PHSLKPTEDCTLDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLT 617
            R++  GGDGTVGW+L  + + N       PPVAI+PLGTGNDL+R   WGG +       + + L+   +     LD W   V      E  DP P+S                            +  NYFSIG+DA +A+ FH +R + P      + NK  Y  +  ++ +  T
Sbjct:  488 RVLACGGDGTVGWILDCIEKANVVKH---PPVAILPLGTGNDLARCLRWGGGYE---GENLMKILKDIESSTEIMLDRWKFEVTPNDKDEKGDPVPYS----------------------------IINNYFSIGVDASIAHRFHIMREKHPEKFNSRMKNKFWYFEFGTSETFSAT 630          
The following BLAST results are available for this feature:
BLAST of FC875439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DGKQ_MOUSE6.426e-1533.13Diacylglycerol kinase theta OS=Mus musculus GN=Dgk... [more]
DGKB_RAT1.096e-1431.07Diacylglycerol kinase beta OS=Rattus norvegicus GN... [more]
DGKB_MOUSE1.096e-1431.07Diacylglycerol kinase beta OS=Mus musculus GN=Dgkb... [more]

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Properties
Property NameValue
Genbank descriptionC31403H11EF CTVClemen1 Citrus clementina cDNA clone C31403H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875439 ID=FC875439; Name=FC875439; organism=Citrus clementina; type=EST; length=755bp
AAACCCATGAGTTTGTCCAGTATGGATTGGCTTGTTTGGAGAAGTTGGCT
GAGCTTGGTGACTTTTGTGCCAAAGATACTCGTCAAAAGATGAGAATAGT
GGTTGCTGGAGGTGATGGTACGGTTGGTTGGGTACTAGGAAGTGTTGGTG
AACTTAACAAACAGGGCCGGGAGCCAGTTCCTCCAGTAGCAATTATTCCA
CTTGGTACAGGAAATGACCTCTCCAGGAGTTTTGGTTGGGGCGGCTCATT
TCCGTTTGCCTGGAAATCAGCTGTCAAAAGAACTCTTCAGAGAGCCAGTG
CAGGTCCAATATGCCGTCTAGACAGTTGGCATGCTGTAATTCAAATGCCA
TCTGGAGAAGTTGTGGATCCACCCCATTCTCTGAAGCCTACTGAAGATTG
TACTCTTGATCAGGGCTTACAGATTGAGGGGGCACTGCCTGAAAAAGTGA
ACTGCTATGAAGGAGTGTTTTATAATTACTTCAGCATAGGAATGGATGCT
CAAGTTGCTTATGGCTTCCACCATTTACGTAATGAAAAACCTTACCTTGC
ACAAGGTCCTATTTCAAATAAGTTAATATACTCTGGCTACAGTTGCACTC
AGGGTTGGTTCCTCACACCTTGCATAAGTGATCCAAATTTAAGGGGACTC
AAGAACATCCTACGGATGCATGTTAAGAAGGTCAATTGCTCAGAATGGGA
GCAGGTTGCAGTCCCTAAAGTGTGAGGGCAATAGTTGCTTTGAATCTCAT
ACTAT
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