FC875440

Overview
NameFC875440
Unique NameFC875440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.610e-55
Identity = 85/174 (48.85%), Postives = 114/174 (65.52%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K ++  F AQ  HETTGGW  AP G YAWG C+  E+   SS YCD     +PC  GK Y+GRGPIQ++WN+NY   G+ LG   D L NP+++A        ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC   G+  V NRIGF+
Sbjct:  101 KREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSS-YCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGF--DGLRNPEIVANCSD----IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFY 267          

HSP 2 Score: 60.8474 bits (146), Expect = 6.610e-55
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = 1
Query:   28 GTAGDGG------ELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 228
            G  G GG       +  I+S +++  L  +++D  CPAR FYTY +F+ AA  FP F  +G    RKRE+AAF
Sbjct:   35 GGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAF 107          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 7.807e-53
Identity = 84/174 (48.28%), Postives = 106/174 (60.92%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP----NYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K +L  FFAQT  ET+G         + WGYC   E+   +SDYCDP    +YPC   YYGRGP+QL WNYNY  CG  LG  ++LL+ P+ +AT+     VLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++
Sbjct:  115 KRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLG--QNLLDEPEKVATDP----VLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYY 281          

HSP 2 Score: 63.929 bits (154), Expect = 7.807e-53
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   67 SREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            +  MFE +L  RN+  CP + FYTYDA+  A + +P FG +G++  RKRE+AAFF
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFF 122          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.066e-51
Identity = 81/174 (46.55%), Postives = 113/174 (64.94%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K ++  F AQT H T+GG        Y+WGYC+ +EV  A+SD+C PN  +PC  GK Y+ RGP+Q+ +NYNY   GE +G   DLL NP+L+AT+      ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGA--DLLGNPELVATDP----TVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFY 306          

HSP 2 Score: 69.707 bits (169), Expect = 7.066e-51
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   31 TAGDGGELG--KIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 228
            TA  GG  G   +++ + FE +L +R+D  CPAR FY Y AF+ AA AFPAF  +G+   RKRE+AAF
Sbjct:   88 TAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.066e-51
Identity = 81/174 (46.55%), Postives = 113/174 (64.94%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K ++  F AQT H T+GG        Y+WGYC+ +EV  A+SD+C PN  +PC  GK Y+ RGP+Q+ +NYNY   GE +G   DLL NP+L+AT+      ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGA--DLLGNPELVATDP----TVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFY 306          

HSP 2 Score: 69.707 bits (169), Expect = 7.066e-51
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   31 TAGDGGELG--KIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 228
            TA  GG  G   +++ + FE +L +R+D  CPAR FY Y AF+ AA AFPAF  +G+   RKRE+AAF
Sbjct:   88 TAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 84/184 (45.65%), Postives = 110/184 (59.78%), Query Frame = 2
Query:  164 KLFQPLVTLEMKPCVKEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K F    T       K ++  F AQT HETTGGWP AP G Y        E+G+ S             Y+GRGPIQ+++NYNY   G+ +G   DLL NPDL+ +++     + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG G    V +RIG++
Sbjct:   30 KSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNYNYGAAGKAIG--VDLLRNPDLVTSDN----TVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYY 187          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.732e-32
Identity = 65/174 (37.36%), Postives = 97/174 (55.75%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC-DPNYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGND-AVR-NRIGFF 715
            K ++  F A     T+G   D     +AWG C         +D+C   ++PC    KY  RGPIQLT N+NY   G+ +G  EDL+ NPDL+    ++  ++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+      +G +D AVR + IGF+
Sbjct:  180 KREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIG--EDLIQNPDLV----EKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISR----AFGHDDFAVRSSSIGFY 336          

HSP 2 Score: 57.7658 bits (138), Expect = 1.732e-32
Identity = 24/56 (42.86%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   61 IISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 228
            +++  +F+ +  +R D  CP++ FY+Y +F+ AA++FPAFG  G+   RKRE+AAF
Sbjct:  133 VVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAF 186          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.724e-28
Identity = 62/176 (35.23%), Postives = 81/176 (46.02%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYCDPN----YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K ++  FFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QL+WNYNY   G+ +  G D L NP+ +AT+       SFK+A+WFWMT                     +V++    G+G TT  ING +EC     D   +RI F+
Sbjct:  136 KREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAI--GFDGLGNPEKVATDVN----TSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFY 271          

HSP 2 Score: 51.6026 bits (122), Expect = 8.724e-28
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1
Query:   28 GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFF
Sbjct:   79 GTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFF 143          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.379e-27
Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K ++  FFA   HET               +C+  E+   S +YCD     +PC  GK YYGRGP+Q++WN+NY   G+ +  G D L +PD +A +     VL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++
Sbjct:  119 KREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSI--GFDGLGDPDAVARSP----VLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYY 254          

HSP 2 Score: 54.6842 bits (130), Expect = 9.379e-27
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    4 CG---ECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            CG   +  P D  A +   +  I++ E F  L+   +D  C A+ FYT DAF+ AA  +P+FG +G+    KREIAAFF
Sbjct:   49 CGTGCQAGPCDVPATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFF 126          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.693e-26
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  299 YCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            +C+  E+  AS DYCD N   YPC  GK Y+GRGPIQL+WNYNY  CG+ L    +LL  P+L+++N      ++F++ +WFWM +  P       ++++              G+G T   IN G+EC  G + AV  RI ++
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNL--NLLGQPELVSSNP----TVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYY 251          

HSP 2 Score: 46.9802 bits (110), Expect = 2.693e-26
Identity = 28/77 (36.36%), Postives = 38/77 (49.35%), Query Frame = 1
Query:    7 GECDPDDGTAGD--GGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            G C    GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  F
Sbjct:   55 GPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMF 126          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.702e-25
Identity = 60/174 (34.48%), Postives = 84/174 (48.28%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K ++  FFA   HET                C+  E+  AS DYCD N   +PC+   KYYGRGP+Q++WNYNY   G+ +  G D L +PD +A    +   +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++
Sbjct:  138 KREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNI--GFDGLRDPDRVA----QDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYY 271          

HSP 2 Score: 38.891 bits (89), Expect = 1.702e-25
Identity = 23/71 (32.39%), Postives = 34/71 (47.89%), Query Frame = 1
Query:   28 GTAGDGGELG---KIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            G  G GG  G   + +  E F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFF
Sbjct:   75 GGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFF 145          
The following BLAST results are available for this feature:
BLAST of FC875440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI10_ORYSJ6.610e-5548.85Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR7.807e-5348.28Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ7.066e-5146.55Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI7.066e-5146.55Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA4.065e-4045.65Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI1.732e-3237.36Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIP_BETVU8.724e-2835.23Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI6_ORYSJ9.379e-2731.03Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA2.693e-2637.50Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI5_ORYSJ1.702e-2534.48Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC31403H12EF CTVClemen1 Citrus clementina cDNA clone C31403H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875440 ID=FC875440; Name=FC875440; organism=Citrus clementina; type=EST; length=723bp
GTTTGCGGTGAATGTGATCCCGACGACGGGACGGCTGGTGATGGCGGTGA
ACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTGAGTATA
GAAATGATAAACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTT
ATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAAC
CATGCGTAAAAGAGAAATTGCTGCCTTTTTTTGCCCAAACTGGCCATGAA
ACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATA
TTGCTTTAATAGGGAAGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTA
ACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACT
TGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCGAGGAGAGGA
CTTGTTGAACAATCCAGACCTTCTTGCTACTAATGATAAAGAAGGACGAG
TACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCA
AAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAA
TGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAA
TCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGCTGTACGTAAC
CGTATTGGGTTCTTTACACTTTC
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