FC875440

Overview
NameFC875440
Unique NameFC875440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.366e-25
Identity = 58/175 (33.14%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFF 715
            K ++  FFA   HET               +C+  E+  +++ YCDP    +PC    KYYGRGP+Q++WNYNY   G  +  G D L +P  +A +     V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++
Sbjct:  120 KREIAAFFAHATHETGH-------------FCYISEINKSNA-YCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAI--GFDGLGDPGRVARD----AVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYY 252          

HSP 2 Score: 51.6026 bits (122), Expect = 6.366e-25
Identity = 23/68 (33.82%), Postives = 37/68 (54.41%), Query Frame = 1
Query:   28 GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            G+ G G  +  +++   F  + + +    C  + FYT  AF+ A K +P F + G++   KREIAAFF
Sbjct:   61 GSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFF 127          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.381e-24
Identity = 54/173 (31.21%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K ++  +FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QL+WNYNY+  G+ L    D LN+PD++  +     ++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC       +  R+G++
Sbjct:   97 KREIAAYFAHVTHETGH-------------LCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKEL--HFDGLNDPDIVGRDP----IISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYY 233          

HSP 2 Score: 50.447 bits (119), Expect = 2.381e-24
Identity = 27/69 (39.13%), Postives = 35/69 (50.72%), Query Frame = 1
Query:   25 DGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            D   GDG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+F
Sbjct:   36 DPCEGDGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYF 104          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.089e-24
Identity = 56/174 (32.18%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFF 715
            K ++  FFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q++WN+NY   G+ +  G D L +PD +A    +   +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNI--GFDGLRDPDKVA----QDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYY 268          

HSP 2 Score: 41.9726 bits (97), Expect = 3.089e-24
Identity = 21/66 (31.82%), Postives = 34/66 (51.52%), Query Frame = 1
Query:   34 AGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFF
Sbjct:   78 AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFF 142          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.864e-24
Identity = 56/175 (32.00%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  209 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFF 715
            K ++  FFA   HET               +C+  E+  +++ YCD +   +PC    KYYGRGP+Q++WNYNY   G  +G     L +P+ +A    +  V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNA-YCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNG--LADPNRVA----QDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECN-GNNPAQMNARVGYY 263          

HSP 2 Score: 48.9062 bits (115), Expect = 8.864e-24
Identity = 25/68 (36.76%), Postives = 35/68 (51.47%), Query Frame = 1
Query:   28 GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            G  G GG     +  + F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFF
Sbjct:   71 GGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.319e-21
Identity = 50/151 (33.11%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  299 YCFNREVGAASSDYCDPN----YPCRGK--YYGRGPIQLTWNYNYLRCG-----EGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFT 718
            +C+  E+  AS DYCD      YPC     Y+GRGPIQL+WN+NY   G     +GLG  E + N+            V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDV-----------VVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYT 254          

HSP 2 Score: 41.9726 bits (97), Expect = 1.319e-21
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 1
Query:  106 DKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 231
            D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA F
Sbjct:   85 DSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          
BLAST of FC875440 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 2
Query:  533 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 670
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of FC875440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_MAIZE6.366e-2533.14Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIT_DIOJA2.381e-2431.21Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_ORYSJ3.089e-2432.18Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE8.864e-2432.00Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU1.319e-2133.11Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY1.780e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31403H12EF CTVClemen1 Citrus clementina cDNA clone C31403H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875440 ID=FC875440; Name=FC875440; organism=Citrus clementina; type=EST; length=723bp
GTTTGCGGTGAATGTGATCCCGACGACGGGACGGCTGGTGATGGCGGTGA
ACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTGAGTATA
GAAATGATAAACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTT
ATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAAC
CATGCGTAAAAGAGAAATTGCTGCCTTTTTTTGCCCAAACTGGCCATGAA
ACTACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATA
TTGCTTTAATAGGGAAGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTA
ACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACT
TGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCGAGGAGAGGA
CTTGTTGAACAATCCAGACCTTCTTGCTACTAATGATAAAGAAGGACGAG
TACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCA
AAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAA
TGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAA
TCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGCTGTACGTAAC
CGTATTGGGTTCTTTACACTTTC
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