FC875443

Overview
NameFC875443
Unique NameFC875443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: GRP75_MOUSE (Stress-70 protein, mitochondrial OS=Mus musculus GN=Hspa9 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.266e-57
Identity = 107/154 (69.48%), Postives = 127/154 (82.47%), Query Frame = 1
Query:  208 RPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            R ++S+     ++GIDLGTTNSCVA+MEGK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQAVTNP NT + TKRLIGR++DDP+ QK+ + V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYF
Sbjct:   44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYF 197          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: GRP75_CRIGR (Stress-70 protein, mitochondrial OS=Cricetulus griseus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.266e-57
Identity = 107/154 (69.48%), Postives = 127/154 (82.47%), Query Frame = 1
Query:  208 RPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            R ++S+     ++GIDLGTTNSCVA+MEGK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQAVTNP NT + TKRLIGR++DDP+ QK+ + V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYF
Sbjct:   44 RDYASETIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYF 197          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_METSB (Chaperone protein dnaK OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dnaK PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.266e-57
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEG  PKVIEN+EG+RTTPS+VAF   GE LVG PAKRQ+VTNP  T F  KRLIGR +DDP T+K+M +V YKI+RA NGDAWVEA+G+QYSPSQI AF+L KMKETAE+YLG+ VS+AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGTTPKVIENAEGARTTPSIVAFTDDGERLVGQPAKRQSVTNPERTFFAIKRLIGRTYDDPMTKKDMGLVPYKIIRASNGDAWVEADGKQYSPSQISAFILQKMKETAEAYLGQPVSQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: GRP75_CHICK (Stress-70 protein, mitochondrial OS=Gallus gallus GN=HSPA9 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.504e-57
Identity = 109/158 (68.99%), Postives = 129/158 (81.65%), Query Frame = 1
Query:  196 ASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            A+ +R ++S+     +IGIDLGTTNSCVA+MEGK  KV+ENSEG+RTTPSVVAF   GE LVG PAKRQAVTNP NT + TKRLIGR+FDD + +K+++ V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG     AVITVPAYF
Sbjct:   42 AASSRKYASEAIKGAVIGIDLGTTNSCVAVMEGKQAKVLENSEGARTTPSVVAFTADGERLVGMPAKRQAVTNPHNTFYATKRLIGRRFDDSEVKKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHPAKNAVITVPAYF 199          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_SPHWW (Chaperone protein dnaK OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dnaK PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.504e-57
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEG  PKVIEN+EG+RTTPS+VAF + GE L+G PAKRQAVTNP NT+F  KRLIGR+FDDP T+K+ ++V Y IV+ PNGDAWV+A G+ YSPSQI AF L KMKETAESYLG++V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGGKPKVIENAEGARTTPSIVAFAKDGERLIGQPAKRQAVTNPDNTIFAVKRLIGRRFDDPITRKDTELVPYHIVKGPNGDAWVQAGGEDYSPSQISAFTLQKMKETAESYLGETVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_RHIME (Chaperone protein dnaK OS=Rhizobium meliloti GN=dnaK PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 107/143 (74.83%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCV++M+GK+ KVIEN+EG+RTTPS+VAF + GE LVG PAKRQAVTNP NTLF  KRLIGR F+DP TQK+  MV YKIV+A NGDAWVEA+G  YSPSQI A +L KMKETAESYLG+ V KAVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVSVMDGKDAKVIENAEGARTTPSMVAFTEDGERLVGQPAKRQAVTNPENTLFAIKRLIGRTFEDPTTQKDKGMVPYKIVKADNGDAWVEAHGTSYSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_NOVAD (Chaperone protein dnaK OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dnaK PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.765e-56
Identity = 103/143 (72.03%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+G  PKVIENSEG+RTTPS+VAF + GE L+G PAKRQAVTNP NT+F  KRLIGR+FDDP TQK+ ++V Y I +  NGDAWV+A GQ YSPSQI AF L KMKETAE+YLG++V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGGTPKVIENSEGARTTPSIVAFTKDGERLIGQPAKRQAVTNPDNTIFAVKRLIGRRFDDPMTQKDTELVPYTITKGKNGDAWVKAGGQDYSPSQISAFTLQKMKETAEAYLGETVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_BEII9 (Chaperone protein dnaK OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dnaK PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.765e-56
Identity = 105/143 (73.43%), Postives = 121/143 (84.62%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEG  PKVIEN+EG+RTTPS+VAF   GE LVG PAKRQ VTNP  T F  KRLIGR F+DP T+K++ +V YKI +APNGDAWVEA+G+ YSPSQI AF+L KMKETAESYLG+ VS+AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGTTPKVIENAEGARTTPSIVAFTDDGERLVGQPAKRQGVTNPERTFFAIKRLIGRTFEDPMTKKDIGLVPYKITKAPNGDAWVEADGKPYSPSQISAFILQKMKETAESYLGQPVSQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_XANP2 (Chaperone protein dnaK OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.611e-56
Identity = 105/143 (73.43%), Postives = 121/143 (84.62%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            IIGIDLGTTNSCVA+MEG  PKVIEN+EG+RTTPS+VAF + GE LVG PAKRQ+VTNP  T F  KRLIGR++DDP  +K+  +V Y IVRA NGDAWVEA+G++YSPSQI AFVL KMKETAES+LG+ V KAVITVPAYF
Sbjct:    4 IIGIDLGTTNSCVAVMEGSTPKVIENAEGARTTPSIVAFTEDGERLVGQPAKRQSVTNPERTFFAVKRLIGRRYDDPTVEKDKHLVPYSIVRADNGDAWVEADGKKYSPSQISAFVLQKMKETAESFLGEKVEKAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_METS4 (Chaperone protein dnaK OS=Methylobacterium sp. (strain 4-46) GN=dnaK PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.611e-56
Identity = 106/143 (74.13%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEG  PKVIEN+EG+RTTPS+VAF  +GE LVG PAKRQAVTNP+ T F  KRLIGR +DDP TQK+  +V Y IVRA NGDAWVEA+G+Q+SPSQI AF L KMKETAESYLG+ V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGTQPKVIENAEGARTTPSIVAFTDEGERLVGQPAKRQAVTNPSRTFFAIKRLIGRTYDDPMTQKDKGLVPYHIVRAGNGDAWVEADGKQFSPSQISAFTLQKMKETAESYLGQPVTQAVITVPAYF 146          
The following BLAST results are available for this feature:
BLAST of FC875443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP75_MOUSE4.266e-5769.48Stress-70 protein, mitochondrial OS=Mus musculus G... [more]
GRP75_CRIGR4.266e-5769.48Stress-70 protein, mitochondrial OS=Cricetulus gri... [more]
DNAK_METSB4.266e-5774.13Chaperone protein dnaK OS=Methylocella silvestris ... [more]
GRP75_CHICK9.504e-5768.99Stress-70 protein, mitochondrial OS=Gallus gallus ... [more]
DNAK_SPHWW9.504e-5772.73Chaperone protein dnaK OS=Sphingomonas wittichii (... [more]
DNAK_RHIME2.117e-5674.83Chaperone protein dnaK OS=Rhizobium meliloti GN=dn... [more]
DNAK_NOVAD2.765e-5672.03Chaperone protein dnaK OS=Novosphingobium aromatic... [more]
DNAK_BEII92.765e-5673.43Chaperone protein dnaK OS=Beijerinckia indica subs... [more]
DNAK_XANP23.611e-5673.43Chaperone protein dnaK OS=Xanthobacter autotrophic... [more]
DNAK_METS43.611e-5674.13Chaperone protein dnaK OS=Methylobacterium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC31404A03EF CTVClemen1 Citrus clementina cDNA clone C31404A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875443 ID=FC875443; Name=FC875443; organism=Citrus clementina; type=EST; length=675bp
GGTCGAACTAAATCTCTGTTTCTCCTCACACGCAGCTGAAACAGATCGAT
TCAGCGACCTTTAGCTATGGCCACCTCCGTTCTGCTTCGACAATTACGGC
GCCGTGAAGTTGCCTCCGCCCCCATCTCCGCCTACAAATGCTTTACTAGC
AATGTTAAGCCCTCATGGGCCCCTTCTAATCTGGGTAAAAGTTGGGCGAG
TTTGACTAGACCTTTCAGTTCAAAACCTGCTGGTAATGACATTATTGGAA
TTGATCTCGGAACTACCAACTCATGTGTTGCACTTATGGAGGGAAAGAAC
CCCAAAGTTATTGAGAACTCCGAAGGATCTAGGACTACACCATCAGTTGT
AGCTTTCAATCAGAAGGGAGAGCTACTTGTGGGTACACCAGCAAAGCGTC
AGGCTGTGACCAACCCAACTAACACGCTCTTTGGCACCAAGCGTTTAATT
GGTAGAAAATTTGATGATCCCCAGACGCAAAAAGAAATGCAGATGGTTTC
ATATAAGATAGTAAGGGCCCCCAATGGGGATGCTTGGGTTGAAGCCAATG
GGCAGCAGTACTCGCCAAGTCAGATTGGGGCCTTTGTTCTGACCAAGATG
AAAGAAACTGCAGAATCCTACCTTGGAAAGTCAGTTTCAAAAGCAGTAAT
CACAGTTCCAGCTTATTTCACGATG
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