FC875443

Overview
NameFC875443
Unique NameFC875443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_MAGSA (Chaperone protein dnaK OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dnaK PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.811e-55
Identity = 103/143 (72.03%), Postives = 120/143 (83.92%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEGKN KVIEN+EG RTTPS+ AF + GE LVG PAKRQAVTNPT+TLF  KRLIGR+F+DP T+K+M +V Y IV   NGDAWVEA   +YSPSQ+ AF+L KMKETAE YLG+ V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGKNAKVIENAEGMRTTPSMTAFTESGERLVGQPAKRQAVTNPTSTLFAIKRLIGRRFEDPITKKDMNLVPYHIVAGDNGDAWVEARDAKYSPSQVSAFILQKMKETAEGYLGEKVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPS (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.895e-55
Identity = 100/143 (69.93%), Postives = 121/143 (84.62%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GKN KVIEN+EG RTTPS+VA +  GE LVG PAKRQAVTNP  T F  KRL+GR++DDP  +K+ ++V YKIV+A NGDAWVEA+GQ YSPSQ+ AF+L KMKETAE++LG+ V +AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKNSKVIENAEGMRTTPSIVAISDDGERLVGQPAKRQAVTNPERTFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAWVEADGQTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_METNO (Chaperone protein dnaK OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=dnaK PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.895e-55
Identity = 104/143 (72.73%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEG  PKVIEN+EG+RTTPS+VAF   GE LVG PAKRQAVTNP+ T F  KRLIGR +DDP TQK+  +V Y I RA NGDAWV A+G+Q+SPSQI AF L KMKETAESYLG+ V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGTQPKVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPSRTFFAIKRLIGRTYDDPMTQKDKGLVPYAITRAGNGDAWVAADGKQFSPSQISAFTLQKMKETAESYLGQPVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_GLUOX (Chaperone protein dnaK OS=Gluconobacter oxydans GN=dnaK PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.895e-55
Identity = 104/143 (72.73%), Postives = 120/143 (83.92%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+ EG   KVIENSEG+RTTPS+VAF   GE LVG  AKRQAVTNP NTL+  KRLIGR++DDP  QK+ +MV Y IVR  NGDAWVEA G++Y+PSQI A+VL KMKETAESYLG++VS+AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVREGDETKVIENSEGARTTPSMVAFTDNGERLVGQAAKRQAVTNPANTLYAVKRLIGRRYDDPTVQKDKEMVPYAIVRGDNGDAWVEARGEKYAPSQIAAYVLGKMKETAESYLGETVSQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HSP7M_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=AN6010 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.517e-54
Identity = 107/166 (64.46%), Postives = 126/166 (75.90%), Query Frame = 1
Query:  172 PSNLGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            PS   + W S     + +     +IGIDLGTTNS VA+MEGK PK+IEN+EG+RTTPSVVAF Q GE LVG  AKRQAV NP NTLF TKRLIGRKF D + Q++++ V YKIV+  NGDAWVEA G++YSP+QIG FVL KMKETAE+YL K V  AV+TVPAYF
Sbjct:   25 PSTAARRWNS-----TEEKVKGQVIGIDLGTTNSAVAVMEGKTPKIIENAEGARTTPSVVAFAQDGERLVGIAAKRQAVVNPENTLFATKRLIGRKFTDAEVQRDIKEVPYKIVQHTNGDAWVEARGEKYSPAQIGGFVLGKMKETAENYLSKPVKNAVVTVPAYF 185          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_CAUSK (Chaperone protein dnaK OS=Caulobacter sp. (strain K31) GN=dnaK PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.517e-54
Identity = 103/143 (72.03%), Postives = 120/143 (83.92%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            IIGIDLGTTNSCVA+M+GK PKVIEN+EG+RTTPSVVAF + GE LVG PAKRQAVTNPTNTLF  KRLIGR F DP   K+  MV Y+IV+ P GDAWV+A+G+ YSP ++ AF+L KMKE AES+LG+ V+KAVITVPAYF
Sbjct:    4 IIGIDLGTTNSCVAIMDGKTPKVIENAEGARTTPSVVAFLEDGERLVGQPAKRQAVTNPTNTLFAIKRLIGRNFADPVVAKDKAMVPYEIVKGPTGDAWVKAHGKDYSPQEVSAFILQKMKEAAESHLGEPVTKAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_METPB (Chaperone protein dnaK OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=dnaK PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.982e-54
Identity = 103/143 (72.03%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEG  P+VIEN+EG+RTTPS+VAF   GE LVG PAKRQAVTNP  T F  KRLIGR +DDP TQK+  +V YKI R  NGDAWVEA+G++YSPSQI AF L KMKETAES+LG+ V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGTQPRVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPLTQKDKGLVPYKIARGDNGDAWVEADGKKYSPSQISAFTLQKMKETAESHLGQPVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_METEP (Chaperone protein dnaK OS=Methylobacterium extorquens (strain PA1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.982e-54
Identity = 103/143 (72.03%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEG  P+VIEN+EG+RTTPS+VAF   GE LVG PAKRQAVTNP  T F  KRLIGR +DDP TQK+  +V YKI R  NGDAWVEA+G++YSPSQI AF L KMKETAES+LG+ V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGTQPRVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPLTQKDKGLVPYKIARGDNGDAWVEADGKKYSPSQISAFTLQKMKETAESHLGQPVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_METC4 (Chaperone protein dnaK OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=dnaK PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.982e-54
Identity = 103/143 (72.03%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEG  P+VIEN+EG+RTTPS+VAF   GE LVG PAKRQAVTNP  T F  KRLIGR +DDP TQK+  +V YKI R  NGDAWVEA+G++YSPSQI AF L KMKETAES+LG+ V++AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGTQPRVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPLTQKDKGLVPYKIARGDNGDAWVEADGKKYSPSQISAFTLQKMKETAESHLGQPVTQAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP5 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisA53) GN=dnaK PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.588e-54
Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+M+GK PKVIEN+EG RTTPS+VAF+  GE LVG PAKRQAVTNP  T F  KRLIGR++DDP  +K+ ++V YKIV+A NGDAWVEA+   YSPSQ+ AF+L KMKETAE++LG  V +AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMDGKTPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKKLVPYKIVKASNGDAWVEADANTYSPSQVSAFILQKMKETAEAHLGAKVDQAVITVPAYF 146          
The following BLAST results are available for this feature:
BLAST of FC875443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_MAGSA6.811e-5572.03Chaperone protein dnaK OS=Magnetospirillum magneti... [more]
DNAK_RHOPS8.895e-5569.93Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_METNO8.895e-5572.73Chaperone protein dnaK OS=Methylobacterium nodulan... [more]
DNAK_GLUOX8.895e-5572.73Chaperone protein dnaK OS=Gluconobacter oxydans GN... [more]
HSP7M_EMENI1.517e-5464.46Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
DNAK_CAUSK1.517e-5472.03Chaperone protein dnaK OS=Caulobacter sp. (strain ... [more]
DNAK_METPB1.982e-5472.03Chaperone protein dnaK OS=Methylobacterium populi ... [more]
DNAK_METEP1.982e-5472.03Chaperone protein dnaK OS=Methylobacterium extorqu... [more]
DNAK_METC41.982e-5472.03Chaperone protein dnaK OS=Methylobacterium chlorom... [more]
DNAK_RHOP52.588e-5469.93Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]

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Properties
Property NameValue
Genbank descriptionC31404A03EF CTVClemen1 Citrus clementina cDNA clone C31404A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875443 ID=FC875443; Name=FC875443; organism=Citrus clementina; type=EST; length=675bp
GGTCGAACTAAATCTCTGTTTCTCCTCACACGCAGCTGAAACAGATCGAT
TCAGCGACCTTTAGCTATGGCCACCTCCGTTCTGCTTCGACAATTACGGC
GCCGTGAAGTTGCCTCCGCCCCCATCTCCGCCTACAAATGCTTTACTAGC
AATGTTAAGCCCTCATGGGCCCCTTCTAATCTGGGTAAAAGTTGGGCGAG
TTTGACTAGACCTTTCAGTTCAAAACCTGCTGGTAATGACATTATTGGAA
TTGATCTCGGAACTACCAACTCATGTGTTGCACTTATGGAGGGAAAGAAC
CCCAAAGTTATTGAGAACTCCGAAGGATCTAGGACTACACCATCAGTTGT
AGCTTTCAATCAGAAGGGAGAGCTACTTGTGGGTACACCAGCAAAGCGTC
AGGCTGTGACCAACCCAACTAACACGCTCTTTGGCACCAAGCGTTTAATT
GGTAGAAAATTTGATGATCCCCAGACGCAAAAAGAAATGCAGATGGTTTC
ATATAAGATAGTAAGGGCCCCCAATGGGGATGCTTGGGTTGAAGCCAATG
GGCAGCAGTACTCGCCAAGTCAGATTGGGGCCTTTGTTCTGACCAAGATG
AAAGAAACTGCAGAATCCTACCTTGGAAAGTCAGTTTCAAAAGCAGTAAT
CACAGTTCCAGCTTATTTCACGATG
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