FC875443

Overview
NameFC875443
Unique NameFC875443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_CAMJD (Chaperone protein dnaK OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=dnaK PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 77/143 (53.85%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+ E    KVI N EG  TTPSVVAF  KGE+LVG  AKRQAVTNP  T++  KR++G   ++   ++    + Y I    NG   +E  G+ Y+P +I A VL K+KE AE++LG+SV  AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTDKGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKTRLPYHITER-NGACAIEIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYF 145          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HSP7S_PEA (Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.278e-34
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  214 FSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            F+ +     ++GIDLGTTNS VA MEG  P +I N+EG RTTPSVVA+ + G+ LVG  AKRQAV NP NT F  KR IGRK    +  +E + VSY+++R  NG+  ++  A G+ ++  +I A VL K+ + A  +L   V+KAV+TVPAYF
Sbjct:   61 FTLRVVSEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--EVDEESKQVSYRVIRDDNGNVKLDCPAIGKSFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYF 212          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_CYACA (Chaperone protein dnaK OS=Cyanidium caldarium GN=dnaK PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.278e-34
Identity = 75/145 (51.72%), Postives = 103/145 (71.03%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDA--WVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            I+GIDLGTTNS +A+ME   P VI NSEG RTTPSVVA+ + G+LLVG  AKRQAV NP+NT +  KR IGRKF+  +  +E + V+Y++ + P+G+   +     + ++P +I A V+ K+ E A  YLG+ ++KAVITVPAYF
Sbjct:    4 IVGIDLGTTNSVIAVMEMGKPAVIPNSEGFRTTPSVVAYAKNGDLLVGQIAKRQAVINPSNTFYSVKRFIGRKFE--EINEENRQVTYQVNKDPSGNVKIYCPFKNKDFTPEEISAQVIRKLTEGASKYLGEKITKAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HS7C2_DICDI (Heat shock cognate 70 kDa protein 2 OS=Dictyostelium discoideum GN=hspE-1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 78/147 (53.06%), Postives = 101/147 (68.71%), Query Frame = 1
Query:  244 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGD---AWVEANGQ--QYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            IGIDLGTT SCV + +    ++I N +G+RTTPS VAFN+  E L+G  AK Q   NPTNT+F  KRLIGRKF DP  Q +M+   +K++ A  GD     VE  G+   +SP ++ + VL KMKETAE+YLGK+++ AVITVPAYF
Sbjct:    5 IGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFNET-ERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFSDPVIQSDMKHWPFKVI-AKEGDKPHLQVEFKGEVKTFSPEEVSSMVLLKMKETAEAYLGKTINNAVITVPAYF 149          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK2_SYNE7 (Chaperone protein dnaK2 OS=Synechococcus elongatus (strain PCC 7942) GN=dnaK2 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 78/144 (54.17%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEAN-GQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            ++GIDLGTTNSCVA+MEG  P VI N+EG RTTPSVVAF +  + LVG  AKRQAV NP NT +  KR IGR+ D  +   E+  V+YK+  + N      +N G+Q++P +I A VL K+ E A  YLG++V++AVITVPAYF
Sbjct:    4 VVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVAFAKNQDRLVGQIAKRQAVMNPENTFYSVKRFIGRRPD--EVTNELTEVAYKVDTSGNAVKLDSSNAGKQFAPEEISAQVLRKLAEDASKYLGETVTQAVITVPAYF 145          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 76/153 (49.67%), Postives = 102/153 (66.67%), Query Frame = 1
Query:  226 PAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQ-----YSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            P    +IGIDLGTT SCV + +    ++I N +G+R TPS VAF    E L+G  AK QA  NP  T+F  KRLIGRKF+D + QK+M++V YKIV   +G  +++   Q+     +SP +I A +LTKMKETAE++LGK +  AV+TVPAYF
Sbjct:   33 PKLGTVIGIDLGTTYSCVGVYKDGKVEIIANDQGNRITPSWVAFTND-ERLIGEAAKNQAAANPERTIFDVKRLIGRKFEDKEVQKDMKLVPYKIVNR-DGKPYIQVKVQEGETKVFSPEEISAMILTKMKETAETFLGKKIKDAVVTVPAYF 183          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_CAMLR (Chaperone protein dnaK OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dnaK PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 75/143 (52.45%), Postives = 96/143 (67.13%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCV++ E    KVI N EG  TTPSVVAF  KGE+LVG  AKRQAVTNP  T++  KR++G   ++   ++    + Y I    NG   +E  G+ Y+P +I A VL K+KE AE++LG+ V  AVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVSVYERGESKVIPNKEGKNTTPSVVAFTDKGEILVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITER-NGACAIEIAGKIYTPQEISAKVLMKLKEDAEAFLGEKVEDAVITVPAYF 145          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK3_SYNP6 (Chaperone protein dnaK 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaK3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 73/144 (50.69%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFT 672
            +IGIDLGTTNSCVA++EG  P ++ N EG RTTPS+VA  +KG+ +VG  AKRQAVTN  NT++  KR IGR+++D  T+ E   V+Y  V   +    V    +  +P +I A VL K+++ AE++LG+ V++AVITVPAYFT
Sbjct:    4 VIGIDLGTTNSCVAVLEGGKPIIVTNREGDRTTPSIVAVGRKGDRIVGRMAKRQAVTNAENTVYSIKRFIGRRWED--TEAERSRVTYTCVPGKDDTVNVTIRDRVCTPQEISAMVLQKLRQDAETFLGEPVTQAVITVPAYFT 145          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK1_SYNE7 (Chaperone protein dnaK1 OS=Synechococcus elongatus (strain PCC 7942) GN=dnaK1 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 73/144 (50.69%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFT 672
            +IGIDLGTTNSCVA++EG  P ++ N EG RTTPS+VA  +KG+ +VG  AKRQAVTN  NT++  KR IGR+++D  T+ E   V+Y  V   +    V    +  +P +I A VL K+++ AE++LG+ V++AVITVPAYFT
Sbjct:    4 VIGIDLGTTNSCVAVLEGGKPIIVTNREGDRTTPSIVAVGRKGDRIVGRMAKRQAVTNAENTVYSIKRFIGRRWED--TEAERSRVTYTCVPGKDDTVNVTIRDRVCTPQEISAMVLQKLRQDAETFLGEPVTQAVITVPAYFT 145          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 75/148 (50.68%), Postives = 101/148 (68.24%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQ-----YSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTT SCV + +  + ++I N +G+R TPS VAF   GE L+G  AK  A  NP  T+F  KRLIGRKFDD + Q++M++V YKIV   +G  +++   +      +SP +I A +LTKMKETAE+YLGK +  AV+TVPAYF
Sbjct:   39 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-GERLIGEAAKNLAAVNPERTVFDVKRLIGRKFDDKEVQRDMKLVPYKIVN-KDGKPYIQVKIKDGETKIFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYF 184          
The following BLAST results are available for this feature:
BLAST of FC875443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_CAMJD1.744e-3453.85Chaperone protein dnaK OS=Campylobacter jejuni sub... [more]
HSP7S_PEA2.278e-3448.70Stromal 70 kDa heat shock-related protein, chlorop... [more]
DNAK_CYACA2.278e-3451.72Chaperone protein dnaK OS=Cyanidium caldarium GN=d... [more]
HS7C2_DICDI2.975e-3453.06Heat shock cognate 70 kDa protein 2 OS=Dictyosteli... [more]
DNAK2_SYNE72.975e-3454.17Chaperone protein dnaK2 OS=Synechococcus elongatus... [more]
BIP_SPIOL2.975e-3449.67Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
DNAK_CAMLR3.885e-3452.45Chaperone protein dnaK OS=Campylobacter lari (stra... [more]
DNAK3_SYNP63.885e-3450.69Chaperone protein dnaK 3 OS=Synechococcus sp. (str... [more]
DNAK1_SYNE73.885e-3450.69Chaperone protein dnaK1 OS=Synechococcus elongatus... [more]
BIP4_TOBAC5.074e-3450.68Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31404A03EF CTVClemen1 Citrus clementina cDNA clone C31404A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875443 ID=FC875443; Name=FC875443; organism=Citrus clementina; type=EST; length=675bp
GGTCGAACTAAATCTCTGTTTCTCCTCACACGCAGCTGAAACAGATCGAT
TCAGCGACCTTTAGCTATGGCCACCTCCGTTCTGCTTCGACAATTACGGC
GCCGTGAAGTTGCCTCCGCCCCCATCTCCGCCTACAAATGCTTTACTAGC
AATGTTAAGCCCTCATGGGCCCCTTCTAATCTGGGTAAAAGTTGGGCGAG
TTTGACTAGACCTTTCAGTTCAAAACCTGCTGGTAATGACATTATTGGAA
TTGATCTCGGAACTACCAACTCATGTGTTGCACTTATGGAGGGAAAGAAC
CCCAAAGTTATTGAGAACTCCGAAGGATCTAGGACTACACCATCAGTTGT
AGCTTTCAATCAGAAGGGAGAGCTACTTGTGGGTACACCAGCAAAGCGTC
AGGCTGTGACCAACCCAACTAACACGCTCTTTGGCACCAAGCGTTTAATT
GGTAGAAAATTTGATGATCCCCAGACGCAAAAAGAAATGCAGATGGTTTC
ATATAAGATAGTAAGGGCCCCCAATGGGGATGCTTGGGTTGAAGCCAATG
GGCAGCAGTACTCGCCAAGTCAGATTGGGGCCTTTGTTCTGACCAAGATG
AAAGAAACTGCAGAATCCTACCTTGGAAAGTCAGTTTCAAAAGCAGTAAT
CACAGTTCCAGCTTATTTCACGATG
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